Pairwise Alignments

Query, 222 a.a., response regulator transcription factor from Pseudomonas fluorescens SBW25

Subject, 220 a.a., DNA-binding response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  232 bits (591), Expect = 5e-66
 Identities = 116/217 (53%), Positives = 155/217 (71%), Gaps = 2/217 (0%)

Query: 1   MRLLLVEDNVPLADELLAGLQRQGYAVDWLADGRDAVYQGRSEPYDLIILDLGLPGLPGL 60
           MRLLL+ED++ L   L+  L + GY V+   +G D  + G  E ++ +ILDLGLPG PGL
Sbjct: 1   MRLLLIEDDIDLVARLIPALNKAGYTVEHADNGIDGAFLGEEEAFEAVILDLGLPGKPGL 60

Query: 61  EVLAQWRAAALAIPVLILTARDSWAERIEGLKAGADDYLAKPFHPEELYLRIQALLRRSH 120
            VL+ WR   LA+PVLILTARD+W ER++GLKAGADDYL KPFH EEL  R++AL+RR  
Sbjct: 61  SVLSHWRQKGLAMPVLILTARDAWHERVDGLKAGADDYLGKPFHVEELLARLEALIRRHF 120

Query: 121 GQTNQPTLQAAGLHLDEGRQCVLR-DGAEIQLTAAEFRLLRYFMLHPEQILSKSHLAEHL 179
           G+ +   LQ AG+ LD  +Q     +G  I+LT  E+RLL Y M +P +I+SKS L+E +
Sbjct: 121 GRADN-LLQHAGVSLDVDKQTATNAEGEVIELTKIEYRLLHYLMANPSKIVSKSELSERI 179

Query: 180 YDGETERDSNVLEVHVNHLRRKLGRSVIETRRGQGYR 216
           Y+ +  +DSNV+EV+VN LR++LG+  IETRRGQGYR
Sbjct: 180 YEEDQIKDSNVIEVYVNRLRQRLGKDYIETRRGQGYR 216