Pairwise Alignments

Query, 785 a.a., DNA polymerase II from Pseudomonas fluorescens SBW25

Subject, 791 a.a., DNA polymerase elongation subunit (family B) from Pseudomonas stutzeri RCH2

 Score = 1256 bits (3250), Expect = 0.0
 Identities = 616/784 (78%), Positives = 683/784 (87%), Gaps = 3/784 (0%)

Query: 4   QQGFVLTRHWRDTPTGTEVSFWLATDQGPRFIRLPVQTSVMFVPEAHRKPLDWLLKGERD 63
           Q+GF+LTRHWRDTP GTE+SFWLATD GPR + +P Q SV FVPE      + LL+ ERD
Sbjct: 9   QRGFILTRHWRDTPAGTEISFWLATDDGPRQVCVPHQHSVAFVPEEQHALAEPLLRRERD 68

Query: 64  IELRPLQLCDFHHRPVLGLYTRQHRQAMDVEKRLRAAGVDVYEGDVRPPERYMMERFITA 123
            ELRPL LCDF HRPV+GLY R +R+ +D  + LR AGVDVYE D+RPPERY+MERFITA
Sbjct: 69  AELRPLALCDFRHRPVMGLYCRSYRRLLDCARLLRDAGVDVYEADIRPPERYLMERFITA 128

Query: 124 PVWFGGTPDTSGVLCDAQMKPAPDYRPPLKLVSLDIETTAQGDLYSIALEGCGERQVYML 183
           PV F   P     L + Q+KPA DYRP L+LVSLDIETTA+GDLYSIALEGCG+RQVYML
Sbjct: 129 PVSFTDAPAGRN-LVNTQLKPASDYRPQLRLVSLDIETTARGDLYSIALEGCGQRQVYML 187

Query: 184 GPPN-KTDAVDFKLDYCDTRAQLLERLNEWLAQHDPDAIIGWNVVQFDLRVLHEHAQRLN 242
           GP N +  AVDF L+YC++R +LLERLN W A HDPDAIIGWN+VQFDLRVLHEH+QRL 
Sbjct: 188 GPENAQGTAVDFALEYCESRRELLERLNAWFAAHDPDAIIGWNLVQFDLRVLHEHSQRLQ 247

Query: 243 VPLMLGRGDEPMAWREHGSR-NHYFAAAAGRLIIDGIEALRSATWSFESFSLENVAQTLL 301
           VPL LGRG E M WREHG R NH+FAA AGRLIIDGIEALRSATWSF SFSLENVAQTLL
Sbjct: 248 VPLRLGRGGEEMEWREHGGRGNHFFAATAGRLIIDGIEALRSATWSFPSFSLENVAQTLL 307

Query: 302 GEGKDISTPYQRMDEINRMFAEDKPALARYNLKDCELVTRIFEKTELLKFLLERASVTGL 361
           GEGK I  PYQRM EI+RMFA+DKPALARYNLKDCELVTRIF  TELL FLLERA+VTGL
Sbjct: 308 GEGKAIDNPYQRMAEIDRMFAQDKPALARYNLKDCELVTRIFAHTELLTFLLERATVTGL 367

Query: 362 PADRNGGSVAAFTHLYMPLMHRQGFVAPNLGDKPPQASPGGFVMDSRPGLYESVLVLDYK 421
            ADR+GGSVAAF HLYMPLMHRQGFVAPNLG++  +ASPGGFVM+S+PGLYESVLVLDYK
Sbjct: 368 AADRSGGSVAAFEHLYMPLMHRQGFVAPNLGERQAEASPGGFVMNSQPGLYESVLVLDYK 427

Query: 422 SLYPSIIRSFLIDPVGLIEGLKYPDDSDSVEGFRGARFSRTRHCLPAIVARVSEGREVAK 481
           SLYPSIIR+FLIDPVGLIEGL++P+D  S+ GFRGARFSRTRHCLPAIV RV EGRE AK
Sbjct: 428 SLYPSIIRTFLIDPVGLIEGLRHPNDESSIPGFRGARFSRTRHCLPAIVERVWEGRETAK 487

Query: 482 REHNAPLSQALKIIMNAFYGVLGSSGCRFFDTRLASSITMRGHQIMRQTRELVEAQGYEV 541
           REHN PLSQALKIIMNAFYGVLGSSGCRFFDTRLASSIT+RGH+IMR+TREL+EAQG+ V
Sbjct: 488 REHNKPLSQALKIIMNAFYGVLGSSGCRFFDTRLASSITLRGHEIMRRTRELIEAQGHAV 547

Query: 542 IYGDTDSTFVWLGSAHSQEEASRIGRGLVQHVNDWWREHLHTTFGLQSALELQYETHFTR 601
           IYGDTDSTFVWL  AHS  EA+ IGR LVQH+NDWW EHL   +GL SALELQYETHF R
Sbjct: 548 IYGDTDSTFVWLRKAHSDGEAACIGRELVQHINDWWCEHLQVEYGLASALELQYETHFRR 607

Query: 602 FLMPTIRGAEEGSKKRYAGLVVRSDGSEDMVYKGLETVRSDWSPLARRFQQELYQRIFHR 661
           FLMPTIRGAEEGSKKRYAGLV R DGS+ MV+KGLETVR+DWSPLA+RFQQELYQRIFHR
Sbjct: 608 FLMPTIRGAEEGSKKRYAGLVTRPDGSDGMVFKGLETVRTDWSPLAQRFQQELYQRIFHR 667

Query: 662 QPHQDYIRDYVRRTLSGEFDELLIYRKRLRRRLDDYERNVPPHVRAARLADEYNDRLNRP 721
           QPH+DY+R+YVRRTL+GE D+LLIYRKRLRRRLDDY+RNVPPHVRAARLADE+N+R  RP
Sbjct: 668 QPHRDYVREYVRRTLAGELDDLLIYRKRLRRRLDDYQRNVPPHVRAARLADEFNERQGRP 727

Query: 722 RQYQRGGWISYVISVNGPEPLEVRQAPIDYDHYVTRQLQPVADAILPFVNDDFSTLVGGQ 781
           RQYQ GGWISY+I+V GPEPLE R + IDYDHYVTRQLQPVADAILPFV DDF++LV GQ
Sbjct: 728 RQYQNGGWISYLITVAGPEPLETRSSVIDYDHYVTRQLQPVADAILPFVGDDFASLVDGQ 787

Query: 782 MGLF 785
           +GLF
Sbjct: 788 LGLF 791