Pairwise Alignments

Query, 296 a.a., pseudouridine synthase from Pseudomonas fluorescens SBW25

Subject, 558 a.a., pseudouridine synthase, RluA family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 73.2 bits (178), Expect = 1e-17
 Identities = 80/281 (28%), Positives = 117/281 (41%), Gaps = 33/281 (11%)

Query: 33  HFPAIAREHWLDRIARGRVLDINGSPISL-DLAYKEGLCIYYFREVPNEKVIPVQE--TI 89
           H  A++RE  + R  R     + G   ++ +   + G  +     VP  KV P      +
Sbjct: 44  HGDAVSREK-VKRAIRDGAATVQGRACTVPNTRVEPGQTVTLTLAVPAAKVTPEDGDLAV 102

Query: 90  LYADEHLVVADKPHFLPVTPAGEYVEQTLLRRLIRCLDNPALVP------LHRIDRHTAG 143
           LY D  + V DKP  L V P     E TL+ RL+R     A         +HRID+ T+G
Sbjct: 103 LYRDAAIAVLDKPAGLTVHPCPSCPEGTLVHRLVRHFPELAAQEGFRPGIVHRIDKDTSG 162

Query: 144 LVLFSANPASRSAYQQLFPTRQIDKFYEAIAPALP----NLTFP----RVHKSRLVEGEP 195
           L+L +   A R    + F  RQ+ K Y A+   +P     L  P     +HK ++     
Sbjct: 163 LLLVALTEAVRLELSRAFAERQVHKEYLALVHGVPKAQGELEAPIGRHPLHKVKMAV--- 219

Query: 196 FFRMQEGPGASNTETAVEVREKKADLWRYGLFPV---TGKKHQLRVHMTALGASICNDPF 252
              + E  G     +A  V     D  R+ L  V   TG+ HQ+RVHM  LG  +  D  
Sbjct: 220 ---VPENRGGKPARSAWRVLLADPD-GRFALVAVRIFTGRTHQIRVHMAHLGHPLWQDAV 275

Query: 253 Y--PDVIKDA---VDDYANPLKLLAQGVLFIDPVTGEERHF 288
           Y   + +  A   + D+     L A  + F  P T  + HF
Sbjct: 276 YGPSEAVAPAAGELPDFPPRQMLHAWRLSFRHPETDRDMHF 316