Pairwise Alignments

Query, 557 a.a., DEAD/DEAH box helicase from Pseudomonas fluorescens SBW25

Subject, 532 a.a., ATP-dependent RNA helicase, DEAD/DEAH family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  367 bits (941), Expect = e-106
 Identities = 219/547 (40%), Positives = 312/547 (57%), Gaps = 33/547 (6%)

Query: 8   FAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAFALPILHC 67
           F    L   +L A+   G+ EPS IQ  +IP ++ G+D+IGQAQTGTGKTAAF LP+L  
Sbjct: 7   FKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLPLLQR 66

Query: 68  IDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQ 127
           ID A R  QAL+L PTRELALQVA      AK + GV +++VYGG P+ PQ  A+R GAQ
Sbjct: 67  IDAADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASALRRGAQ 126

Query: 128 IVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPTRQTVLFS 187
           +VV TPGR+ DH+ R    L  V   VLDEADEML +GF +D+E I   +P   Q+  FS
Sbjct: 127 VVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWVQSAFFS 186

Query: 188 ATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFDA 247
           AT+P  I  +A R LR+P+ +++  +  TV   EQA   V   ++  AV  + +      
Sbjct: 187 ATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCRIFDAYIPRK 246

Query: 248 LIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAAR 307
            I+F  TKQ   +LA+AL+ +G  A AL+GD+ Q QRERV+   + G + ++VATDVAAR
Sbjct: 247 AIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVLVATDVAAR 306

Query: 308 GLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQK 367
           GLDV  +  V N D+P DPE+YVHRIGRTGRAGR GRA      R+   L+ I+RVTG +
Sbjct: 307 GLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGRAFSFAAGRDVYKLRDIQRVTGSR 366

Query: 368 VAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHG-DLLDRLTADIGCTPRALAAALLR 426
           +    +P A     AR  +L   +A  +A AE++    ++++L A+ G  P  LAA LLR
Sbjct: 367 IDRRAMPTAADASRARTGQLLEEVAAGLASAETSACLPVVEKLIAE-GADPTQLAATLLR 425

Query: 427 KATNGQALTLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPVPLAEGRARCRTA 486
                       ++++R  +P      D                     +  GR R    
Sbjct: 426 MI----------MQRDRIDLPGARQTDD---------------------IGTGRVRLFFN 454

Query: 487 LGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLKDTRVAG 546
           +G R  I  ++L+GAI  E G++  +IG I++ D FS VE+      ++++ +   ++ G
Sbjct: 455 VGRRMRITPRDLVGAIAGETGISGRSIGSIEIHDRFSFVEVDASIAPEVVSVMHGNQIRG 514

Query: 547 KQLKLRR 553
            +L + +
Sbjct: 515 FRLAVEQ 521