Pairwise Alignments

Query, 557 a.a., DEAD/DEAH box helicase from Pseudomonas fluorescens SBW25

Subject, 647 a.a., ATP-dependent RNA helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  316 bits (809), Expect = 2e-90
 Identities = 184/545 (33%), Positives = 301/545 (55%), Gaps = 14/545 (2%)

Query: 8   FAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMA-GQDMIGQAQTGTGKTAAFALPILH 66
           F    ++P I  A+   GYE P  +Q++ IP ++    D++  AQTGTGKTAAF LP+L 
Sbjct: 4   FEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLLQ 63

Query: 67  CIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGA 126
            ID   R PQ+LIL PTREL LQ+A     Y+K + G+ V+ VYGG+ +  Q+++++ G 
Sbjct: 64  QIDVKNRVPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLKRGV 123

Query: 127 QIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPTRQTVLF 186
            I+VATPGRL D + R    LSTV+++V+DEADEML +GF D +  I   +P  R T+LF
Sbjct: 124 HIIVATPGRLLDLMERKTVSLSTVHNIVMDEADEMLNMGFTDSINAILADVPKERNTLLF 183

Query: 187 SATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFD 246
           SAT+   I  I++ +L++ + + I  K ++ + ++     V A  K +A+  +++     
Sbjct: 184 SATMSPEIARISKNYLQNAKEITIGRKNESTSNVKHVAYTVQAKDKYAALKRIVDYYPQI 243

Query: 247 ALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAA 306
             I+F RT++ T ++A  L  +GY A +L+G+++Q QR+ V+   +   L ++VATDVAA
Sbjct: 244 YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLVATDVAA 303

Query: 307 RGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQ 366
           RGLDV  +THV N  +P D ESY HR GRTGRAG+ G ++ ++  RE+  L+ IER+ G+
Sbjct: 304 RGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKLREIERIIGK 363

Query: 367 KVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGDLLDRLTADIGCTPRALAAALLR 426
           K     +P  + + + ++ K+ + L  +  + E    D +  +   +    +     L++
Sbjct: 364 KFIAGEMPTGKQICEKQLIKVIDELEKVKVNEEEI-TDFMPEIYRKLEWLSK---EDLIK 419

Query: 427 KATNGQALTLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPVPLAEGRARCRTA 486
           +  + +        ++R  +    P   R   T D  +RG R+       A G  R    
Sbjct: 420 RMVSHEFNRFLDYYRDREEI--ETPTDSRERNTRDSRERGSRK------AAPGFTRLFIN 471

Query: 487 LGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLKDTRVAG 546
           LG  D      L+ ++LN     R  +GRI +  +FS  E+ E   + ++  L      G
Sbjct: 472 LGKMDSFFPSELI-SLLNSNTRGRIELGRIDLMKNFSFFEVEEKEAQNVVKALNRANWNG 530

Query: 547 KQLKL 551
           +++ +
Sbjct: 531 RKVSV 535