Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Pseudomonas fluorescens SBW25

Subject, 1148 a.a., transcription-repair coupling factor (mfd) from Pseudomonas stutzeri RCH2

 Score = 1978 bits (5124), Expect = 0.0
 Identities = 995/1146 (86%), Positives = 1069/1146 (93%), Gaps = 3/1146 (0%)

Query: 1    MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF 60
            M VLRLP LPAA+GKQHWGNLPGAALSLAIAEAAS AKRFTLLLTADSQSAERL++EL+F
Sbjct: 1    MSVLRLPPLPAASGKQHWGNLPGAALSLAIAEAASNAKRFTLLLTADSQSAERLQEELAF 60

Query: 61   FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT 120
            FAP LPVLHFPDWETLPYD+FSPHQDI+SQRI++LY+LPEL+HGVLVVPITTALHRLAP 
Sbjct: 61   FAPGLPVLHFPDWETLPYDIFSPHQDIVSQRISALYQLPELSHGVLVVPITTALHRLAPK 120

Query: 121  KFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY 180
            +FLLGSSLVLD+GQKLDVEQMR RLEA+GYRCVDTVYEHGEFAVRGALIDLFPMGS LPY
Sbjct: 121  RFLLGSSLVLDVGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSPLPY 180

Query: 181  RIDLFDDEIETLRTFDPENQRSIDKVDSIKLLPAREFPLQKDAVTRFKARFRERFDVDFR 240
            RIDLFDDEIETLRTFDPENQRSIDKV+SI+LLPAREFPL+K+AVT F+ARFRERFDVDFR
Sbjct: 181  RIDLFDDEIETLRTFDPENQRSIDKVESIRLLPAREFPLKKEAVTGFRARFRERFDVDFR 240

Query: 241  RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN 300
            RCPI+QDLS+GITPAGIEYYLPLF++ET+TLFDYLP+D+QVFSLPGIEQAAE FW+DVRN
Sbjct: 241  RCPIYQDLSTGITPAGIEYYLPLFYEETATLFDYLPEDSQVFSLPGIEQAAEQFWSDVRN 300

Query: 301  RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVDAGSGRERFPAGTLPDL 360
            RYEERRVDP RPLLPPAELF+PVEDCFARLK WPRVVASQQDV++G GRERF A  LP+L
Sbjct: 301  RYEERRVDPERPLLPPAELFMPVEDCFARLKLWPRVVASQQDVESGIGRERFNAQALPEL 360

Query: 361  AIQAKATQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVKS 420
            AI++KA++PL  L  FL  +PGRVLFTAESAGRREVLLELL RLKLRP+ VD W DF+ S
Sbjct: 361  AIESKASEPLGKLRQFLESYPGRVLFTAESAGRREVLLELLARLKLRPQEVDGWTDFLAS 420

Query: 421  KERLAITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR 480
             +RLAITIAPLDEGL LDD  +AL+AESPLFGQRVMQRRRREK  D   + VIKNLTELR
Sbjct: 421  DQRLAITIAPLDEGLQLDD--VALVAESPLFGQRVMQRRRREKSRDGGEN-VIKNLTELR 477

Query: 481  EGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVASLHLIARYTGSDDA 540
            EG+PVVHIDHGVGRY GL TLEI+ QA EFL ++YAE AKLYVPVASLHLIARYTGSDDA
Sbjct: 478  EGSPVVHIDHGVGRYQGLTTLEIEGQAQEFLLLQYAEEAKLYVPVASLHLIARYTGSDDA 537

Query: 541  LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFA 600
            LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAF DP+ DY TF+AGF 
Sbjct: 538  LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFKDPQVDYETFAAGFP 597

Query: 601  FEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT 660
            FEETPDQQ  I+AVR D+L+ KPMDRLVCGDVGFGKTEVAMRAAFIAVHGG+QV +LVPT
Sbjct: 598  FEETPDQQAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVGVLVPT 657

Query: 661  TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDV 720
            TLLAQQHYNSFRDRFADWPV VEVMSRFKSAKEV  AIA+LAEGKIDI+IGTHKLL DDV
Sbjct: 658  TLLAQQHYNSFRDRFADWPVRVEVMSRFKSAKEVQNAIAELAEGKIDILIGTHKLLQDDV 717

Query: 721  KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT 780
            K  NLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNM+++GMRDLSIIAT
Sbjct: 718  KFSNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSIAGMRDLSIIAT 777

Query: 781  PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI 840
            PPARRLSVRTFVMEQ  + +KEALLRELLRGGQVYYLHNDVKTIEKCAADL  LVPEAR+
Sbjct: 778  PPARRLSVRTFVMEQQNTVIKEALLRELLRGGQVYYLHNDVKTIEKCAADLQALVPEARV 837

Query: 841  AIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ 900
            AIGHGQMRERDLEQVMSDFYHKRFNVL+ASTIIETGIDVPSANTIIIERADKFGLAQLHQ
Sbjct: 838  AIGHGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLHQ 897

Query: 901  LRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL 960
            LRGRVGRSHHQAYAYLLTP R+ +T DA+KRLEAIAN QDLGAGFVLAT+DLEIRGAGEL
Sbjct: 898  LRGRVGRSHHQAYAYLLTPTRKAMTDDAQKRLEAIANAQDLGAGFVLATHDLEIRGAGEL 957

Query: 961  LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP 1020
            LG+GQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNL+QPLGGGPEINLRLPALIPEDYLP
Sbjct: 958  LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEINLRLPALIPEDYLP 1017

Query: 1021 DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKV 1080
            DVHARLILYKRIA+A DE+GLK+LQVEMIDRFGLLPEPTKNLVRLTLLKLQAE+LGI K+
Sbjct: 1018 DVHARLILYKRIANAADEDGLKELQVEMIDRFGLLPEPTKNLVRLTLLKLQAEKLGITKI 1077

Query: 1081 DAGPQGGRIEFEAQTPVDPLVLIRLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEAL 1140
            DAGPQGGRIEF A T VDP+VLI+LIQ QP RYKFEGATLFKF VPMER EERFNTLEAL
Sbjct: 1078 DAGPQGGRIEFSADTSVDPMVLIKLIQSQPKRYKFEGATLFKFQVPMERPEERFNTLEAL 1137

Query: 1141 FERLIP 1146
             ERL P
Sbjct: 1138 LERLAP 1143