Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Pseudomonas fluorescens SBW25

Subject, 1171 a.a., transcription-repair coupling factor from Sinorhizobium meliloti 1021

 Score =  743 bits (1919), Expect = 0.0
 Identities = 447/1151 (38%), Positives = 669/1151 (58%), Gaps = 51/1151 (4%)

Query: 19   GNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPVLHFPDWETLPY 78
            G +P  A +L +AE A A      +L+ D Q    LEQ L F APD+PVL  P W+ LPY
Sbjct: 22   GPVPTGAEALVLAELARAGAPVAYILS-DGQKVADLEQVLGFVAPDIPVLTLPGWDCLPY 80

Query: 79   DLFSPHQDIISQRIASLYRLPELAH------GVLVVPITTALHRLAPTKFLLGSSLVLDI 132
            D  SP  D  ++R+A+L  L  +AH       +++V I  AL R++P   +   +     
Sbjct: 81   DRVSPSADTSARRLAALSAL--IAHRRKPHPAIVLVTINAALQRISPQDVIESLAFTARP 138

Query: 133  GQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDDEIETL 192
            G ++ ++ +  RLE +G+  V TV E GEFAVRG ++D++  GS  P R+D F D +E +
Sbjct: 139  GNQIRMDDLAARLERNGFERVPTVREMGEFAVRGGILDVYVPGSGEPLRLDFFGDTLEAI 198

Query: 193  RTFDPENQRSIDKVDSIKLLPAREFPLQKDAVTRFKARFRERFDVDFRRCPIFQDLSSGI 252
            R+FDP +QR+I +V S+ L P  E  L  + ++ F+ ++   F    R   ++Q +S G 
Sbjct: 199  RSFDPASQRTIGQVRSLDLNPMSEVSLTPETISHFRKQYLSLFGAATRDDALYQAVSEGR 258

Query: 253  TPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENF-----WNDVR------NR 301
              AG+E++LPLF+D   T+FDYL     V      E AAE       + D R       +
Sbjct: 259  RYAGMEHWLPLFYDRLETVFDYLDGFRIVTDHLAREAAAERSKLVLDYYDARLASASPGK 318

Query: 302  YEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVDAGSGRERF--------- 352
             +  +  P +P+ PP  L+L  +     L +   V  S      G  R+           
Sbjct: 319  SQVTQGTPYKPV-PPDMLYLTAKGFGEALNDLNAVRLSPFTEHEGEARQVVNIEARQGLR 377

Query: 353  ---PAGTLPDLAIQAKA-TQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLER---LK 405
               PAG   +   +     Q ++ ++        +V+ +  + G  + LL++L       
Sbjct: 378  WAKPAGEADNDGTRTNVFDQAVKHIAEKRAK-GAKVIVSGWTEGSLDRLLQVLAEHGLAN 436

Query: 406  LRPKTVDSWPDFVKSKERLAITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKR- 464
            +RP    S    +K  E  A  +  L+ G    D  L +I E  + G R+++R +R KR 
Sbjct: 437  IRPVKALSDIGSLKPGEA-ASAVLSLEAGFETGD--LVVIGEQDILGDRLVRRSKRRKRG 493

Query: 465  ADANNDAVIKNLTELREGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVP 524
            AD      I  +T L EG+ VVH +HG+GR++GL+T+E      + L + YA+ AKL++P
Sbjct: 494  AD-----FIAEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLELVYADDAKLFLP 548

Query: 525  VASLHLIARYTGSDDALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYA 584
            V ++ L++RY GS+   A L +LG   WQ  K K  +++ D+A  L+ I A R  R    
Sbjct: 549  VENIELLSRY-GSEGTDAVLDKLGGVAWQARKAKLKKRLLDMAGGLIRIAAERHTRHAPV 607

Query: 585  FADPKADYATFSAGFAFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAA 644
             A     Y  F+A F ++ET DQ  +I+AVR D+   +PMDRLVCGDVGFGKTEVA+RAA
Sbjct: 608  LAAQDGVYDEFAARFPYDETEDQLNSIDAVRDDLGRGRPMDRLVCGDVGFGKTEVALRAA 667

Query: 645  FIAVHGGKQVAILVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEG 704
            FIA   G QVA++VPTTLLA+QH+ +F DRF   P+ ++  SR   +K++     ++AEG
Sbjct: 668  FIAAMNGVQVAVVVPTTLLARQHFKTFSDRFRGLPIRIQQASRLVGSKDLALTKKEVAEG 727

Query: 705  KIDIVIGTHKLLSDDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRT 764
            K DIV+GTH LL   +K  NLGL+IIDEE  FGV+ KE+LK L+++V +LTL+ATPIPRT
Sbjct: 728  KTDIVVGTHALLGSSIKFANLGLLIIDEEQHFGVKHKERLKELKTDVHVLTLSATPIPRT 787

Query: 765  LNMAVSGMRDLSIIATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTI 824
            L +A++G+R+LS+I TPP  R++VRTF+   +   ++E L+RE  RGGQ +Y+   V  +
Sbjct: 788  LQLALTGVRELSLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQSFYVCPRVSDL 847

Query: 825  EKCAADLAELVPEARIAIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANT 884
             +    L   VPE ++A+ HGQM   +LE +M+ FY  R++VL+++TI+E+G+DVP+ANT
Sbjct: 848  PEIHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANT 907

Query: 885  IIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAG 944
            +I+ RAD FGLAQL+QLRGRVGRS  +A+A    P  + +T  AE+RL+ + +   LGAG
Sbjct: 908  LIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTGPAERRLKVLQSLDTLGAG 967

Query: 945  FVLATNDLEIRGAGELLGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGP 1004
            F LA++DL+IRGAG LLG+ QSG I+ VGF LY +MLE AV  + KGE+   D   G  P
Sbjct: 968  FQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEL-KGEEEIHD--TGWSP 1024

Query: 1005 EINLRLPALIPEDYLPDVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVR 1064
            +I++  P +IPE+Y+PD++ RL LY+R+   TD + +     E+IDRFG LP   ++L++
Sbjct: 1025 QISVGTPVMIPEEYVPDLNLRLGLYRRLGELTDLKEIDGFGAELIDRFGPLPTEVQHLLK 1084

Query: 1065 LTLLKLQAEQLGIKKVDAGPQGGRIEFEAQTPVDPLVLIRLIQGQPNRYKFEGATLFKFM 1124
            +  +K       ++K+DAGP+G  ++F  +   +P  L+  I  Q    K        F 
Sbjct: 1085 IVYVKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPAALVGYIAKQGTVAKIRPDQSIFFQ 1144

Query: 1125 VPMERAEERFN 1135
              +   E+R +
Sbjct: 1145 RELATPEKRLS 1155