Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Pseudomonas fluorescens SBW25

Subject, 1160 a.a., transcription-repair coupling factor (RefSeq) from Shewanella loihica PV-4

 Score = 1255 bits (3247), Expect = 0.0
 Identities = 646/1151 (56%), Positives = 847/1151 (73%), Gaps = 13/1151 (1%)

Query: 3    VLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFF- 61
            +L  P +      Q    L GAA ++++A+        TL++T D+ SA RLE EL +  
Sbjct: 6    ILTPPKVKGVKSPQTLSQLTGAARAISLAKLCEQYSSMTLVVTPDTPSALRLEAELGYLL 65

Query: 62   AP-DLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT 120
            AP  +PV+ FPD ETLPYD FSPHQD++SQR+ +L R+P   H +++VP++T + +L P 
Sbjct: 66   APKSIPVMLFPDRETLPYDSFSPHQDLVSQRLETLSRIPSAGHSLVIVPMSTLMVKLPPQ 125

Query: 121  KFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY 180
             FL G+ L+L  G    +E +R++L  +GY  V+ VYEHGEFAVRG++IDLFPMG++ PY
Sbjct: 126  SFLTGNVLLLSKGDNYPLEAVRSQLVNTGYHHVEQVYEHGEFAVRGSIIDLFPMGAQSPY 185

Query: 181  RIDLFDDEIETLRTFDPENQRSIDKVDSIKLLPAREFPLQKDAVTRFKARFRERFDVDFR 240
            RI+LFDDE+E++R FDPE QRS  +++SI+LLPA+EFP    A+  F+ R+R +F+V  +
Sbjct: 186  RIELFDDEVESIREFDPETQRSSGEIESIRLLPAKEFPTNDAAIEGFRQRYRRQFEVVVK 245

Query: 241  RCP-IFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVR 299
                I+Q +S  + PAGIE YLPLFFDET++LFDYLP + Q+  +  +E AA++   ++ 
Sbjct: 246  EPESIYQMVSRKVMPAGIESYLPLFFDETASLFDYLPGECQLVQVGDLENAAKHHLQEIN 305

Query: 300  NRYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVDAGSGRERFPAGTLPD 359
             RYE RRVDP RPLLPP +L+L  E  F   K  PR +    +        +  A  LP+
Sbjct: 306  QRYENRRVDPLRPLLPPKDLYLLTEQVFEAFKQLPRFLIKGNEATGTCVEAQLEA--LPN 363

Query: 360  LAIQAKATQPLEALSNFL-GDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFV 418
            +A   K  QPL +L  F  G  P  +LF  ES GRRE LLELL +++++P  +D    F 
Sbjct: 364  IAANHKLKQPLISLKEFANGGTP--ILFCVESEGRREALLELLAKIEIKPALLDHLDSFS 421

Query: 419  KSKERLAITIAPLDEGLLLDD---PALALIAESPLFGQRVMQRRRREKRADANNDAVIKN 475
               +   + +APL +G +      P+ AL+ E+ LFGQR+ Q+RRR+K+   + DA+IK+
Sbjct: 422  HKPQPFGLIVAPLSQGAIYHPKKGPSWALVCETELFGQRIAQQRRRDKQRQVSQDALIKD 481

Query: 476  LTELREGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVASLHLIARYT 535
            L EL+ G P+VH+DHGV  Y GL+TL+     AE+L +EYA G KLYVPVASL+LI++Y+
Sbjct: 482  LAELKVGQPIVHLDHGVALYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVASLNLISQYS 541

Query: 536  -GSDDALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYAT 594
             G+DDA   L++LG+E+W KAKRKA E++RDVAAELLD+YARR AR G A    + +YA 
Sbjct: 542  VGADDA-PQLNKLGNESWTKAKRKAIEKIRDVAAELLDVYARRQARPGEACRLDREEYAQ 600

Query: 595  FSAGFAFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQV 654
            F+  F FEET DQ+T I+AV  DM +P  MDRLVCGDVGFGKTEVAMRAAF+AV+ GKQV
Sbjct: 601  FAGSFPFEETVDQETAIDAVLTDMCSPISMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQV 660

Query: 655  AILVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHK 714
            AILVPTTLLAQQHY +F+DRFADWP+ +EVMSRFK+AKE  A +  L  G++DIVIGTHK
Sbjct: 661  AILVPTTLLAQQHYENFKDRFADWPIKIEVMSRFKTAKEQQAVLKQLELGQVDIVIGTHK 720

Query: 715  LLSDDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRD 774
            LL  + K +NLGL+IIDEEHRFGVRQKE++KALR+ +DILTLTATPIPRTLNMA+SGMRD
Sbjct: 721  LLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANIDILTLTATPIPRTLNMAMSGMRD 780

Query: 775  LSIIATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAEL 834
            LSIIATPPA+RL+V+TFV E + +TV+EALLRE+LRGGQVY+LHN V+TIEK A ++  L
Sbjct: 781  LSIIATPPAKRLAVKTFVREYDDATVREALLREILRGGQVYFLHNSVETIEKRAREIEAL 840

Query: 835  VPEARIAIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFG 894
            +PEAR+   HGQMRERDLE+VMSDFYH+++NVL+ +TIIETGIDVPSANTIIIERAD FG
Sbjct: 841  LPEARVVTAHGQMRERDLEKVMSDFYHQKYNVLVCTTIIETGIDVPSANTIIIERADNFG 900

Query: 895  LAQLHQLRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEI 954
            LAQLHQLRGRVGRSHHQAYAYL+ P  +++T DA KRLEAI   +DLGAGF+LAT DLEI
Sbjct: 901  LAQLHQLRGRVGRSHHQAYAYLMMPHPKRMTKDAIKRLEAIGALEDLGAGFMLATQDLEI 960

Query: 955  RGAGELLGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALI 1014
            RGAGELLGD QSG I  +GFTLYMEMLE AVK++++G++P+LDQ L G  EI+LR+PAL+
Sbjct: 961  RGAGELLGDEQSGHISKIGFTLYMEMLEDAVKSLKEGKEPSLDQMLRGQCEIDLRIPALL 1020

Query: 1015 PEDYLPDVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQ 1074
            PEDY+ DV+ RL LYKRIA+    + L +L+VE+IDRFGLLP+ TKNL+ ++L K QA  
Sbjct: 1021 PEDYVGDVNIRLSLYKRIANCATAQALDELKVELIDRFGLLPQATKNLMEVSLFKHQATA 1080

Query: 1075 LGIKKVDAGPQGGRIEFEAQTPVDPLVLIRLIQGQPNRYKFEGATLFKFMVPMERAEERF 1134
            LGI K++   +GG +EF     VDP  +I L+Q QP  Y+ +G +  KF++P E  ++R 
Sbjct: 1081 LGIAKIEMHAKGGSLEFNNDHCVDPGFIIGLLQSQPQNYRMDGPSKLKFLMPTETDKDRL 1140

Query: 1135 NTLEALFERLI 1145
              L  +  +L+
Sbjct: 1141 ALLSLIISQLM 1151