Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Pseudomonas fluorescens SBW25

Subject, 1177 a.a., transcription-repair-coupling factor from Marinobacter adhaerens HP15

 Score = 1421 bits (3679), Expect = 0.0
 Identities = 712/1137 (62%), Positives = 891/1137 (78%), Gaps = 16/1137 (1%)

Query: 1    MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF 60
            +P++        A  + WG L G++ +LAI E+A A K  TL++T  +  A RLEQ + F
Sbjct: 12   LPLIAPEFPSRPADHRTWGQLHGSSEALAICESARAHKGLTLVITRSTADAIRLEQAMRF 71

Query: 61   FA-------------PDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLV 107
            F                L +L  PDWETLPYDLFSPHQDIIS+RI +L+RLP  +HGVLV
Sbjct: 72   FLGLPPEEDGPAVSDDGLELLSLPDWETLPYDLFSPHQDIISRRIRTLHRLPATSHGVLV 131

Query: 108  VPITTALHRLAPTKFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGA 167
            VP  T +HRL P  +L G++L+L++GQ LD+E  R +LEA+GYR  + VYEHGE+AVRGA
Sbjct: 132  VPARTLMHRLPPVNYLQGNTLLLEVGQSLDIESWRMQLEAAGYRHAENVYEHGEYAVRGA 191

Query: 168  LIDLFPMGSKLPYRIDLFDDEIETLRTFDPENQRSIDKVDSIKLLPAREFPLQKDAVTRF 227
            ++D+FPMG+  P+RIDLFDDEIETLRTFDPE QRSID+++ I+LLPA EFP  K+A + F
Sbjct: 192  ILDIFPMGASQPFRIDLFDDEIETLRTFDPETQRSIDRIERIELLPAFEFPWHKEARSGF 251

Query: 228  KARFRERFDVDFRRCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGI 287
            ++R+ E+F    +  PI+QD++ GITP GIEYYLPLFFDET+TLFDYLP  T VF+  G+
Sbjct: 252  RSRWFEQFPDADKDTPIYQDVTHGITPPGIEYYLPLFFDETATLFDYLPGATHVFTADGL 311

Query: 288  EQAAENFWNDVRNRYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVDAGS 347
              A  +F ++ RNRYE+RR D  RP+LPP  LFL  E+ F +LK +PRV  S +  DA +
Sbjct: 312  NDAVSHFDSETRNRYEDRRHDRLRPILPPKRLFLQQEELFGQLKAFPRVTVSAETKDA-A 370

Query: 348  GRERFPAGTLPDLAIQAKATQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLR 407
            G    P  TLPD+A+  +A  P   L  FLG+F G VL  AES+GRRE L+E L    + 
Sbjct: 371  GSVNCPTTTLPDIAMDGRAADPAGRLKRFLGEFDGHVLICAESSGRREALMENLGEQGVE 430

Query: 408  PKTVDSWPDFVKSKER-LAITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRAD 466
             KT+  W  F+  KE  +AITIAP+++GL+L + ++ALI E+ LFG+RV+QRRRREK  +
Sbjct: 431  LKTLSGWQAFLDDKESSVAITIAPMEQGLVLPEHSVALITETALFGERVLQRRRREKPTE 490

Query: 467  ANNDAVIKNLTELREGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVA 526
             + DA  ++L+ELR GAPVVHIDHGVGRYLGL+T+ ++ +A+EFL + YA G+KLYVPV+
Sbjct: 491  TD-DAGFRDLSELRIGAPVVHIDHGVGRYLGLETITVEGEASEFLMLGYAGGSKLYVPVS 549

Query: 527  SLHLIARYTGSDDALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFA 586
            SLHLI+RY G+D   APLH+LG++ W  AK+KA E++RD AAELLD+YARR AR+G++F 
Sbjct: 550  SLHLISRYAGNDTEHAPLHKLGTDRWSTAKQKALEKIRDTAAELLDVYARREARKGFSFE 609

Query: 587  DPKADYATFSAGFAFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFI 646
            DPK  Y  F+AGF FEETPDQQ  I++V  DM + +PMDRLVCGDVGFGKTEVAMRAAF+
Sbjct: 610  DPKEAYRAFAAGFPFEETPDQQVAIQSVFEDMTSEQPMDRLVCGDVGFGKTEVAMRAAFL 669

Query: 647  AVHGGKQVAILVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKI 706
            A   GKQVA+LVPTTLLAQQHY SFRDRF+D PV VE++SRF++A + + A+  +  G+ 
Sbjct: 670  ATWSGKQVAVLVPTTLLAQQHYESFRDRFSDTPVQVELLSRFRTAGQTSKALEAVENGRA 729

Query: 707  DIVIGTHKLLSDDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLN 766
            DIVIGTHKLL  D+K KNLGLVIIDEEHRFGV+QKE+LKALR+EVD+L LTATPIPRTLN
Sbjct: 730  DIVIGTHKLLQGDIKFKNLGLVIIDEEHRFGVQQKERLKALRAEVDMLNLTATPIPRTLN 789

Query: 767  MAVSGMRDLSIIATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEK 826
            MA+  +RDLSIIATPPARRLSV+TFV +++ + VKEA+LRE+LRGGQVY+LHNDV TIEK
Sbjct: 790  MAMGHLRDLSIIATPPARRLSVKTFVRQKDNAMVKEAILREILRGGQVYFLHNDVATIEK 849

Query: 827  CAADLAELVPEARIAIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTII 886
             A DL  L+PEAR+ + HGQMRERDLE++MSDFYHKRFNVL+ +TIIETGIDVPSANTII
Sbjct: 850  TAEDLRSLIPEARVGVAHGQMRERDLEKIMSDFYHKRFNVLVCTTIIETGIDVPSANTII 909

Query: 887  IERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFV 946
            IERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPP + IT+DA+KRL+AI+  QDLGAGF+
Sbjct: 910  IERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKSITADAKKRLDAISEAQDLGAGFM 969

Query: 947  LATNDLEIRGAGELLGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEI 1006
            LAT+DLEIRGAGELLG+ QSGQI+++GFTLYM++L+ AVKAIR+G  PN D PL  G E+
Sbjct: 970  LATHDLEIRGAGELLGEEQSGQIESIGFTLYMQLLDEAVKAIREGRTPNADLPLSHGTEM 1029

Query: 1007 NLRLPALIPEDYLPDVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLT 1066
            NLR+PALIPEDYLPDVH RL+LYKRIAS    E LK+LQVEMIDRFGLLP+P KNL+R T
Sbjct: 1030 NLRIPALIPEDYLPDVHNRLMLYKRIASVDSPEALKELQVEMIDRFGLLPDPAKNLIRQT 1089

Query: 1067 LLKLQAEQLGIKKVDAGPQGGRIEFEAQTPVDPLVLIRLIQGQPNRYKFEGATLFKF 1123
             L+L+AE LGI KVDAG +  R+EF + TPVDPLVL++ +Q  P++Y+ EGA  F+F
Sbjct: 1090 ELRLRAEALGIVKVDAGKEWARLEFGSSTPVDPLVLVKKVQSAPDQYRLEGANSFRF 1146