Pairwise Alignments

Query, 863 a.a., DNA mismatch repair protein MutS from Pseudomonas fluorescens SBW25

Subject, 862 a.a., DNA mismatch repair protein MutS from Vibrio cholerae E7946 ATCC 55056

 Score =  946 bits (2445), Expect = 0.0
 Identities = 501/859 (58%), Positives = 622/859 (72%), Gaps = 11/859 (1%)

Query: 5   TSDLSSHTPMMQQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAG 64
           +  LS HTPMMQQY RLK ++PD L+FYRMGDFYE+FY+DAK+A++LLDI+LT RG SAG
Sbjct: 9   SESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAG 68

Query: 65  QSIPMCGIPYHSLEGYLVKLVKLGESVVICEQIGDPATSKGPVERQVVRIITPGTVSDEA 124
           + IPM G+P+H++EGYL KLV++GESV ICEQIGDPATSKGPVER+VVRI+TPGTV+DEA
Sbjct: 69  EPIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSKGPVERKVVRIVTPGTVTDEA 128

Query: 125 LLDERRDNLIAAVLGDERLFGLSVLDITSGNFSVLEIKGWENLLAELERINPVELLIPDD 184
           LL ER DNLIAA+      FG + +DITSG F + E +  E + AEL+R +P ELL P+D
Sbjct: 129 LLSERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELLFPED 188

Query: 185 WPKDLPAEKRRGTKRRAPWDFERDSALKSLCQQFSVQDLKGFGCETLTLAIGAAGCLLGY 244
           +        R+G +RR  W+FE D+A + L QQF  +DL GFG E   L + AAGCL+ Y
Sbjct: 189 FSPVHLMASRQGNRRRPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGLCAAGCLIQY 248

Query: 245 AKETQRTALPHLRSLRHERLDDTVVLDGASRRNLELDTNLAGGRDNTLQSVVDRCQTAMG 304
            K+TQRTALPH+RSL  +R D +V+LD A+RRNLEL  NLAGG DNTL  V+D C T MG
Sbjct: 249 VKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEVLDHCATPMG 308

Query: 305 SRLLTRWLNRPLRDLTVLQARQTSITCLLDGYRFEKLQPQLKEIGDIERILARIGLRNAR 364
           SR+L RW+++P+RD   L  R  +IT L +   + +L P LK+IGDIERILAR+ LR+AR
Sbjct: 309 SRMLKRWIHQPMRDNATLNQRLDAITELKETALYGELHPVLKQIGDIERILARLALRSAR 368

Query: 365 PRDLARLRDALGALPQLQVAMTELDTPHLQQLAVTAGTYPELAALLEKAIIDNPPAIIRD 424
           PRDLARLR A+  LP+L   M+EL  PHL +L   A    EL  LLE+AI +NPP +IRD
Sbjct: 369 PRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDELCDLLERAIKENPPVVIRD 428

Query: 425 GGVLKTGYDSELDELQSLSENAGQFLIDLEAREKARTGLANLKVGYNRVHGYFIELPSKQ 484
           GGV+  GY +ELDE + L+  A +FL  LEA E+ R G+  LKVGYN VHG++I++   Q
Sbjct: 429 GGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVHGFYIQVSRGQ 488

Query: 485 AESAPIDYQRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYEALLEDLISQLAP 544
           +   P  Y RRQTLK AER+I  ELK  EDK L++KSRALA EK L+E L + L+  L  
Sbjct: 489 SHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQLWEELFDLLMPHLEQ 548

Query: 545 LQDTAAALAELDVLSNLAERALNLDLNCPRFVSEPCMRIVQGRHPVVEQVLTTPFVANDL 604
           LQ  AA++A+LDVL NLAERA NL+   P  V E  + I  GRHPVVE+V+  PF+AN +
Sbjct: 549 LQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQGGRHPVVERVMNEPFIANPI 608

Query: 605 SLDDDTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCELSLVDRIFTRIGSSD 664
            L+   RML+ITGPNMGGKSTYMRQTALI L+AHIGS+VPA S  +  +DRIFTRIG+SD
Sbjct: 609 ELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYVPAESASIGPLDRIFTRIGASD 668

Query: 665 DLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFDGLSLAWAAAERLA-HLRA 723
           DLA GRSTFMVEM+ETANILHNAT  SLVLMDE+GRGTST+DGLSLAWA+AE LA  + A
Sbjct: 669 DLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTSTYDGLSLAWASAEWLAKEIGA 728

Query: 724 YTLFATHYFELTVLPESEPLVTNVHLNATEHNERIVFLHHVLPGPASQSYGLAVAQLAGV 783
            TLFATHYFELT LP   P + NVHL+A EH + I F+H V  G AS+SYGLAVA LAGV
Sbjct: 729 MTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFMHAVQEGAASKSYGLAVAGLAGV 788

Query: 784 PNDVITRAREHLSRLETTALPHETVVASPTKATSKPAAPHQSDMFASLPHP--VLDELAK 841
           P  VI  AR  L +LE        +++S    T KP+    ++  + +P P  V   LA 
Sbjct: 789 PKPVIKNARAKLQQLE--------LLSSQPAETRKPSRVDIANQLSLIPEPSAVEQALAG 840

Query: 842 LDLDGLTPRKALEMLYALQ 860
           +D D LTPR+AL+MLY L+
Sbjct: 841 VDPDQLTPRQALDMLYQLK 859