Pairwise Alignments

Query, 863 a.a., DNA mismatch repair protein MutS from Pseudomonas fluorescens SBW25

Subject, 916 a.a., DNA mismatch repair protein MutS from Sinorhizobium meliloti 1021

 Score =  556 bits (1433), Expect = e-162
 Identities = 346/886 (39%), Positives = 501/886 (56%), Gaps = 36/886 (4%)

Query: 9   SSHTPMMQQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQSIP 68
           S+ TPMM+Q+  +K  +PD L+FYRMGDFYE+F++DA +A++ L ITLT RGQ  GQ IP
Sbjct: 27  STATPMMEQFIEIKANNPDSLLFYRMGDFYELFFQDAVEASRALGITLTKRGQHMGQEIP 86

Query: 69  MCGIPYHSLEGYLVKLVKLGESVVICEQIGDPAT-----SKGPVERQVVRIITPGTVSDE 123
           MCG+P H+ + YL KL+  G  V +CEQ+ DPA      SK  V R VVR++TPGT++++
Sbjct: 87  MCGVPVHAADDYLQKLIASGYRVAVCEQVEDPAEAKKRGSKSVVRRDVVRLVTPGTITED 146

Query: 124 ALLDERRDNLIAAVL----GDERLFGLSVLDITSGNFSVLEIKGWENLLAELERINPVEL 179
            LL     N + A+     G E  + L+ +DI++G F + E      LLA++ RI P EL
Sbjct: 147 KLLSPSESNYLMALARIRSGSEPAYALAWIDISTGIFRLAETAE-SRLLADILRIEPREL 205

Query: 180 LIPDDWPKDLPAEKRRGTKRRAPWD-----FERDSALKSLCQQFSVQDLKGFGCETLTLA 234
           ++PD    D           R         F+  +A   + + + V  L GFG  +    
Sbjct: 206 ILPDTVFHDPDLRPVFDVLGRVAVPQPAVLFDSATAEGRISRYYGVGTLDGFGSFSRA-E 264

Query: 235 IGAAGCLLGYAKETQRTALPHLRSLRHERLDDTVVLDGASRRNLELDTNLAGGRDNTLQS 294
           + AA   + Y ++TQ    P L     E    T+ +D A+R NLEL   L+G RD +L  
Sbjct: 265 LAAASAAVSYVEKTQLQERPALGIPERESAASTLFIDPATRANLELAKTLSGSRDGSLLK 324

Query: 295 VVDRCQTAMGSRLLTRWLNRPLRDLTVLQARQTSITCLLDGYRFEK-LQPQLKEIGDIER 353
            +DR  T+ G+RLL   L  PL D   +  R  SI  L D  RF   ++  L+   D+ R
Sbjct: 325 SLDRTMTSGGARLLAERLMSPLTDPERINQRLDSIEVLADQPRFTTDVRDALRRAPDMPR 384

Query: 354 ILARIGLRNARPRDLARLRDALGALPQLQVAMT--ELDTPHLQQLAVTAGTYPELAALLE 411
            L+R+ L    PRDL  ++  + A   +   ++  EL     +     A    EL A L+
Sbjct: 385 ALSRLALGRGGPRDLGAIQAGMRAAAAISALLSGAELSAELTEARDAIAALPGELLARLD 444

Query: 412 KAIIDNPPAIIRDGGVLKTGYDSELDELQSLSENAGQFLIDLEAREKARTGLANLKVGYN 471
             + +  P + RDGG ++ G  +ELDE+++L + + + +  L+ +    TG+ +LK+ +N
Sbjct: 445 ATLAEELPLLKRDGGFVREGASAELDEMRALRDQSRRVIAGLQLQYCEETGIKSLKIKHN 504

Query: 472 RVHGYFIELPSKQA------ESAPIDYQRRQTLKGAERFITPELKAFEDKALSAKSRALA 525
            V GYFIE+ +  A      ++    +  RQT+  A RF T EL   E K  +A  RALA
Sbjct: 505 NVLGYFIEVTAGNAGSMTDTDAGRARFIHRQTMANAMRFTTTELAELETKIANAADRALA 564

Query: 526 REKMLYEALLEDLISQLAPLQDTAAALAELDVLSNLAERALNLDLNCPRFVSEPCMRIVQ 585
            E   +EA++ +++++   ++  A ALA +DV + LA  A   +   P         I  
Sbjct: 565 IELETFEAMVREVVAEAEAIKAAALALATIDVSAGLAVLAEEQNYTRPTVDRSRMFAIDG 624

Query: 586 GRHPVVEQVL----TTPFVANDLSL-----DDDTRMLVITGPNMGGKSTYMRQTALIVLL 636
           GRHPVVEQ L      PFVAN   L     +    + ++TGPNMGGKST++RQ ALI ++
Sbjct: 625 GRHPVVEQALRRQAANPFVANGCDLSPPNGEQGGAIWLLTGPNMGGKSTFLRQNALIAIM 684

Query: 637 AHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMD 696
           A  GSFVPAA+  + +VDR+F+R+G+SDDLA GRSTFMVEM ETA IL+ AT+RSLV++D
Sbjct: 685 AQTGSFVPAAAAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRSLVILD 744

Query: 697 EVGRGTSTFDGLSLAWAAAERLAHL-RAYTLFATHYFELTVLPESEPLVTNVHLNATEHN 755
           E+GRGT+TFDGLS+AWAA E L  + R   LFATH+ ELTVL E    ++N  +   E +
Sbjct: 745 EIGRGTATFDGLSIAWAAVEHLHEVNRCRGLFATHFHELTVLSEKLVRLSNATMRVKEWD 804

Query: 756 ERIVFLHHVLPGPASQSYGLAVAQLAGVPNDVITRAREHLSRLETTALPHETVVASPTKA 815
             ++FLH V PG A +SYG+ VA+LAG+P  V+ RAR+ L++LE     +          
Sbjct: 805 GDVIFLHEVGPGAADRSYGIQVARLAGLPASVVARARDVLAKLEDADRKNPASQLIDDLP 864

Query: 816 TSKPAAPHQSDMFASL-PHPVLDELAKLDLDGLTPRKALEMLYALQ 860
             + A   +    AS  P  V + L  L+ D +TPR+AL+ LYAL+
Sbjct: 865 LFQVAVRREEAARASSGPSKVEEALKALNPDDMTPREALDALYALK 910