Pairwise Alignments

Query, 863 a.a., DNA mismatch repair protein MutS from Pseudomonas fluorescens SBW25

Subject, 855 a.a., DNA mismatch repair protein (RefSeq) from Shewanella loihica PV-4

 Score =  919 bits (2376), Expect = 0.0
 Identities = 478/858 (55%), Positives = 615/858 (71%), Gaps = 11/858 (1%)

Query: 4   NTSDLSSHTPMMQQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSA 63
           +T  L  HTPMM+QY  LK + PD L+FYRMGDFYE+FY+DAK+A++LL I+LTARG+S 
Sbjct: 5   DTQYLEKHTPMMRQYLTLKAETPDMLLFYRMGDFYELFYDDAKRASELLGISLTARGKSG 64

Query: 64  GQSIPMCGIPYHSLEGYLVKLVKLGESVVICEQIGDPATSKGPVERQVVRIITPGTVSDE 123
           G  IPM GIPYH++EGYL KLV+L  SV ICEQIGDPAT+KGPVER++VRI+TPGT++DE
Sbjct: 65  GDPIPMAGIPYHAVEGYLAKLVQLRVSVAICEQIGDPATTKGPVERKIVRIVTPGTLTDE 124

Query: 124 ALLDERRDNLIAAVLGDERLFGLSVLDITSGNFSVLEIKGWENLLAELERINPVELLIPD 183
           ALL ER+DNL+AAV   +  FG + LD++SG F V E+   E L AEL+R NP ELL  +
Sbjct: 125 ALLQERQDNLLAAVYHGKVGFGYATLDVSSGRFVVTELASKEALEAELQRTNPAELLYSE 184

Query: 184 DWPKDLPAEKRRGTKRRAPWDFERDSALKSLCQQFSVQDLKGFGCETLTLAIGAAGCLLG 243
           D+ +        G +RR  W+F+ D++ K L +QF  +DL GFG   + L++ AAGCL+ 
Sbjct: 185 DFSEPALIASLSGKRRRPEWEFDYDTSYKLLLEQFGTKDLYGFGLGEVRLSLQAAGCLIQ 244

Query: 244 YAKETQRTALPHLRSLRHERLDDTVVLDGASRRNLELDTNLAGGRDNTLQSVVDRCQTAM 303
           Y K+TQRTALPH+ ++      D++VLD A+R+NLEL  NL GG DNTL SV+D   T M
Sbjct: 245 YVKDTQRTALPHINAITRFNQCDSIVLDAATRKNLELTRNLQGGSDNTLASVLDNTATPM 304

Query: 304 GSRLLTRWLNRPLRDLTVLQARQTSITCLLDGYRFEKLQPQLKEIGDIERILARIGLRNA 363
           GSR+L RW++ PLR+  +++AR  +I  LLD    E L  QLK +GDIERI AR+ +R+A
Sbjct: 305 GSRMLQRWIHEPLRNHNIIRARHDAIDELLDNGYHESLHEQLKALGDIERITARLAIRSA 364

Query: 364 RPRDLARLRDALGALPQLQVAMTELDTPHLQQLAVTAGTYPELAALLEKAIIDNPPAIIR 423
           RPRD ARLR AL  LP++Q  + + ++PHL+ L+   G +PE  ALL +AI+DNPP +IR
Sbjct: 365 RPRDFARLRQALALLPEIQQQLADCNSPHLKALSSHLGDFPEEHALLSRAIVDNPPMLIR 424

Query: 424 DGGVLKTGYDSELDELQSLSENAGQFLIDLEAREKARTGLANLKVGYNRVHGYFIELPSK 483
           DGGV+K GY +ELDE + LS+ A  +L +LEAREKA TG + LKVGYNRVHGY+IE+  +
Sbjct: 425 DGGVIKEGYHNELDEWRKLSQGATDYLAELEAREKAATGASTLKVGYNRVHGYYIEVSRR 484

Query: 484 QAESAPIDYQRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYEALLEDLISQLA 543
           +++  P+ YQRRQTLK  ER+I  ELK  E+K LS++ +ALA EK L+E L + L+ +L 
Sbjct: 485 ESDLVPMSYQRRQTLKNTERYIVAELKEHEEKVLSSQGKALALEKQLWEELFDLLMPRLH 544

Query: 544 PLQDTAAALAELDVLSNLAERALNLDLNCPRFVSEPCMRIVQGRHPVVEQVLTTPFVAND 603
            LQ  A A AELDV++N AERA  LD + P   ++  + I  GRHPVVE+V  TPF+AN 
Sbjct: 545 ELQAFARAAAELDVITNFAERAEQLDYHRPELTAQSGIHIEAGRHPVVERVSQTPFIANP 604

Query: 604 LSLDDDTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCELSLVDRIFTRIGSS 663
           +SL+   RML++TGPNMGGKSTYMRQ ALI L+AHIGSFVPA    +  VDRIFTRIG++
Sbjct: 605 VSLNPARRMLIVTGPNMGGKSTYMRQVALITLMAHIGSFVPAQKAAIGPVDRIFTRIGAA 664

Query: 664 DDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFDGLSLAWAAAERLA-HLR 722
           DDLA GRSTFMVEM+ETANILHNAT  SLVLMDE+GRGTST+DGLSLAW+AAE LA +L+
Sbjct: 665 DDLASGRSTFMVEMTETANILHNATPESLVLMDEIGRGTSTYDGLSLAWSAAEHLAQNLK 724

Query: 723 AYTLFATHYFELTVLPESEPLVTNVHLNATEHNERIVFLHHVLPGPASQSYGLAVAQLAG 782
           + TLFATHYFELT LP+    V NVHL+A EH++ I F+H V  G AS+SYGL VA LAG
Sbjct: 725 SMTLFATHYFELTQLPDQMENVANVHLDAIEHDDTIAFMHAVQEGAASKSYGLQVAALAG 784

Query: 783 VPNDVITRAREHLSRLETTALPHETVVASPTKATSKPAAPHQSDMFASLPHPVLDELAKL 842
           VP  V+  A+  L  LE+     E  +    +A      P  S          LD L  +
Sbjct: 785 VPAKVVQAAKHKLHHLESR--DREEELPELRQAQLSMTMPETS--------KALDRLDTI 834

Query: 843 DLDGLTPRKALEMLYALQ 860
           D D LTPR+AL++LY L+
Sbjct: 835 DPDSLTPRQALDLLYELK 852