Pairwise Alignments

Query, 863 a.a., DNA mismatch repair protein MutS from Pseudomonas fluorescens SBW25

Subject, 862 a.a., DNA mismatch repair protein mutS (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  550 bits (1417), Expect = e-160
 Identities = 327/858 (38%), Positives = 504/858 (58%), Gaps = 21/858 (2%)

Query: 14  MMQQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQSIPMCGIP 73
           MM+Q+  LK +HPD +M +R GDFYE +  DA  A+++L ITLT R    G++I M G P
Sbjct: 1   MMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVASEILGITLTKRANGKGKTIEMAGFP 60

Query: 74  YHSLEGYLVKLVKLGESVVICEQIGDPATSKGPVERQVVRIITPGTVSDEALLDERRDNL 133
           +H+L+ YL KL++ G+ V IC+Q+ DP  +K  V+R +  ++TPG   ++ +L+ + +N 
Sbjct: 61  HHALDTYLPKLIRAGKRVAICDQLEDPKLTKKLVKRGITELVTPGVSINDNVLNYKENNF 120

Query: 134 IAAVLGDERLFGLSVLDITSGNFSVLEIKGWENLLAELERINPVELLIPDDWPKDLPAEK 193
           +AAV   +   G++ LDI++G F   E   ++ +   L    P E+L   +  K L  E 
Sbjct: 121 LAAVHFGKASCGVAFLDISTGEFLTAE-GPFDYVDKLLNNFGPKEILF--ERGKRLMFEG 177

Query: 194 RRGTK----RRAPWDFERDSALKSLCQQFSVQDLKGFGCETLTLAIGAAGCLLGYAKETQ 249
             G+K        W F   +A + L + F  ++LKGFG E L   I A+G +L Y   TQ
Sbjct: 178 NFGSKFFTFELDDWVFTESTAREKLLKHFETKNLKGFGVEHLKNGIIASGAILQYLTMTQ 237

Query: 250 RTALPHLRSLRHERLDDTVVLDGASRRNLELDTNLAGGRDNTLQSVVDRCQTAMGSRLLT 309
            T + H+ SL     D  V LD  + R+LEL  ++  G  ++L +V+DR  + MG+RLL 
Sbjct: 238 HTQIGHITSLARIEEDKYVRLDKFTVRSLELIGSMNDG-GSSLLNVIDRTISPMGARLLK 296

Query: 310 RWLNRPLRDLTVLQARQTSITCLLDGYRFEKL-QPQLKEIGDIERILARIGLRNARPRDL 368
           RW+  PL+D   +  R   +        F++L + QL  IGD+ERI++++ +    PR++
Sbjct: 297 RWMVFPLKDEKPINDRLNVVEYFFRQPDFKELIEEQLHLIGDLERIISKVAVGRVSPREV 356

Query: 369 ARLRDALGALPQLQVAMTELDTPHLQQLAVTAGTYPELAALLEKAIIDNPPAIIRDGGVL 428
            +L+ AL A+  ++ A  E D   L ++         +   + K I ++PP +I  GGV+
Sbjct: 357 VQLKVALQAIEPIKQACLEADNASLNRIGEQLNLCISIRDRIAKEINNDPPLLINKGGVI 416

Query: 429 KTGYDSELDELQSLSENAGQFLIDLEAREKARTGLANLKVGYNRVHGYFIELPSKQAESA 488
           K G + ELDEL+ +S +   +L+ ++ RE  +TG+ +LKV YN V GY+IE+ +   +  
Sbjct: 417 KDGVNEELDELRRISYSGKDYLLQIQQRESEQTGIPSLKVAYNNVFGYYIEVRNIHKDKV 476

Query: 489 PIDYQRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYEALLEDLISQLAPLQDT 548
           P ++ R+QTL  AER+IT ELK +E+K L A+ + L  E  LY  L++ L   +  +Q  
Sbjct: 477 PQEWIRKQTLVNAERYITQELKVYEEKILGAEDKILVLETQLYTDLVQALTEFIPQIQIN 536

Query: 549 AAALAELDVLSNLAERALNLDLNCPRFVSEPCMRIVQGRHPVVEQVLT--TPFVANDLSL 606
           A  +A LD L + A  A   +   P       + I QGRHPV+E+ L     ++AND+ L
Sbjct: 537 ANQIARLDCLLSFANVARENNYIRPVIEDNDVLDIRQGRHPVIEKQLPIGEKYIANDVML 596

Query: 607 DD-DTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCELSLVDRIFTRIGSSDD 665
           D    ++++ITGPNM GKS  +RQTALI LLA IGSFVPA S  + LVD+IFTR+G+SD+
Sbjct: 597 DSASQQIIIITGPNMAGKSALLRQTALITLLAQIGSFVPAESAHIGLVDKIFTRVGASDN 656

Query: 666 LAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFDGLSLAWAAAERL---AHLR 722
           ++ G STFMVEM+E A+IL+N + RSLVL DE+GRGTST+DG+S+AWA  E +      +
Sbjct: 657 ISVGESTFMVEMNEAADILNNVSSRSLVLFDELGRGTSTYDGISIAWAIVEYIHEHPKAK 716

Query: 723 AYTLFATHYFELTVLPESEPLVTNVHLNATEHNERIVFLHHVLPGPASQSYGLAVAQLAG 782
           A TLFATHY EL  + +S   + N +++  E + +++FL  +  G +  S+G+ VA++AG
Sbjct: 717 ARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVIFLRKLERGGSEHSFGIHVAKMAG 776

Query: 783 VPNDVITRAREHLSRLETTALPHETVVASPTKATSKPAAPHQSDMFASLPHPVL----DE 838
           +P  ++ RA   L +LE+     + +   P    S+  +  Q   F  L  P+L    DE
Sbjct: 777 MPKSIVKRANTILKQLESDN-RQQGISGKPLTEVSENRSGMQLSFF-QLDDPILCQIRDE 834

Query: 839 LAKLDLDGLTPRKALEML 856
           +  LD++ LTP +AL  L
Sbjct: 835 ILNLDVNNLTPIEALNKL 852