Pairwise Alignments

Query, 465 a.a., sigma-54-dependent Fis family transcriptional regulator from Pseudomonas fluorescens SBW25

Subject, 476 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  332 bits (852), Expect = 1e-95
 Identities = 197/474 (41%), Positives = 281/474 (59%), Gaps = 16/474 (3%)

Query: 5   ILVVDDEPKLCDLLASALGQNNVQVFIAGNGLHALKVLEQEDIDLVISDWRMPGMDGPAL 64
           IL+VDD+ +L       L      V  A +G   L+++ +E  + VI D RMPGM+G   
Sbjct: 4   ILIVDDDHQLRQSFQRLLAVEGHDVRGASSGEQGLRMVREELPECVIMDVRMPGMNGLDA 63

Query: 65  LAEIKVRYPHVPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVAKALQFRDIM 124
           L  ++     +PVI+MTAY+T + A+++ + GA+DYI KPFDI ++   + KA++    M
Sbjct: 64  LKALREIDARLPVIIMTAYATTETAIEATKFGAFDYILKPFDIPDILALIDKAVEAGRRM 123

Query: 125 RDNARLRAELDEHAQFDSLVGDSPAFRKVLQAVDSVRDSSATILLTGESGTGKEMVARAI 184
           R    +  E  +    ++LVG S A  +V +A+     + A +L+ GESGTGKE+VARAI
Sbjct: 124 RGRVAMTPEPGDGGDAEALVGTSRAMHEVYKAIGRAAPTDALVLVRGESGTGKELVARAI 183

Query: 185 HKHGSRADKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADKGTLFLDEV 244
           ++H  RA++P++ +NC AIP+ LLESE+FG+ KGAFTGA   RVG+ +QA  GT+FLDE+
Sbjct: 184 YQHSLRAERPYLVINCVAIPDTLLESELFGYEKGAFTGATHRRVGKIEQASGGTVFLDEI 243

Query: 245 GDMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLEAVANKEFREDLYYRL 304
           GDMPL +QAK+LR LQER IE +G      VDVR+IAATN +L  AVA+  FREDLYYRL
Sbjct: 244 GDMPLGIQAKLLRLLQERQIERLGGRETIPVDVRIIAATNTDLEAAVADGRFREDLYYRL 303

Query: 305 NVFPIPLPALRERVEDIAPLARHFAQTLSATAGKRITGFSPEALQAMAAYHWPGNIRELQ 364
            V  + LP LRER EDI PLAR F    +        G S EAL  M A+ WPGN+REL 
Sbjct: 304 KVVTLWLPPLRERREDIPPLARFFLSRFAREMDTPDPGISTEALAYMEAHPWPGNVRELG 363

Query: 365 NCVERATIV--AAKPVIEDI--DLPGYLFASRPSEGG----------VTAILSDGPGIPQ 410
           N +++A +    A  + EDI   L G   ++   EG           V   LS G     
Sbjct: 364 NAIQKALVFNRGAPLLPEDIRQALEGVRGSTSTREGDEGAGDDLLQLVRRTLSGGD--DN 421

Query: 411 DLDAALAEVEKAYILAALQESNGVQAAAAAKIGISERSFWYRLKKLGIQVDKIV 464
             +  +  V +  +  ALQ + G +  AA  +G+S  +   R+++ G++V++ V
Sbjct: 422 AFETIMDHVGRIVVREALQYTGGNRTRAARLLGMSRPTLLARMERYGLKVEQQV 475