Pairwise Alignments

Query, 465 a.a., sigma-54-dependent Fis family transcriptional regulator from Pseudomonas fluorescens SBW25

Subject, 459 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  356 bits (914), Expect = e-103
 Identities = 198/456 (43%), Positives = 279/456 (61%), Gaps = 4/456 (0%)

Query: 4   NILVVDDEPKLCDLLASALGQNNVQVFIAGNGLHALKVLEQEDIDLVISDWRMPGMDGPA 63
           ++LV+DDEP    ++ + +      V  AG+G   L++L  E + +V+ D RMPGMDG  
Sbjct: 3   HLLVIDDEPGHRLMVRAVMEDVGWHVVEAGSGEEGLELLVHEQVHVVLLDMRMPGMDGQE 62

Query: 64  LLAEIKVRYPHVPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVAKALQFRDI 123
            LA I    P +PV+++TAY TV +AV++M+ GA+DY+ KP D +EL   + KA + R +
Sbjct: 63  TLARILEIQPGLPVVMLTAYGTVGSAVEAMKCGAFDYLTKPADNEELVAVLEKAWEHRRL 122

Query: 124 MRDNARLRAELDEHAQFDSLVGDSPAFRKVLQAVDSVRDSSATILLTGESGTGKEMVARA 183
           + +N  LR    E+     LVG S    ++   +     S AT+L+ GESGTGKE++A+A
Sbjct: 123 VVENEELRKRYVENDPTAPLVGASQVMHRMRDFIRQAGPSEATVLIMGESGTGKELIAQA 182

Query: 184 IHKHGSRADKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADKGTLFLDE 243
           +H   +RA +P V VNCAA+P  LLESE+FG+ +GAFTGAV D+ GRFQ A  GTLFLDE
Sbjct: 183 LHDASTRARQPLVKVNCAALPGHLLESELFGYVRGAFTGAVKDKPGRFQLARGGTLFLDE 242

Query: 244 VGDMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLEAVANKEFREDLYYR 303
           +G++PL LQAK+LR LQERV+EP+G  R   VDVR+IAATN++L   VA   FREDLY+R
Sbjct: 243 IGELPLELQAKLLRVLQERVVEPLGGVRPVSVDVRIIAATNRDLRREVAKGTFREDLYFR 302

Query: 304 LNVFPIPLPALRERVEDIAPLARHFAQTLSATAGKRITGFSPEALQAMAAYHWPGNIREL 363
           LNV  +  P LR+R+ED+  L       L     K I   S +  +A++ + WPGN+REL
Sbjct: 303 LNVLEVVSPPLRKRMEDLPQLVEELLGKLCRKNRKSIRCISADFFEALSRHSWPGNVREL 362

Query: 364 QNCVERATIVAAKPVIEDIDLPGYLFASRPSEGGVTAILSDGPGIPQD-LDAALAEVEKA 422
           +N +ERA I++    +    LP  LF   P    V  +  + P +  D    +L E EK 
Sbjct: 363 ENVLERALILSRTDSLSADALPPQLFGDEPQ---VADMQQERPVVDDDSRPCSLDEAEKG 419

Query: 423 YILAALQESNGVQAAAAAKIGISERSFWYRLKKLGI 458
            +L AL    G +   A  +GIS R+  Y+LKK G+
Sbjct: 420 ELLRALDVHGGHREKTADALGISRRTLQYKLKKFGL 455