Pairwise Alignments

Query, 619 a.a., DUF1302 domain-containing protein from Pseudomonas fluorescens SBW25

Subject, 680 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  333 bits (854), Expect = 1e-95
 Identities = 235/691 (34%), Positives = 346/691 (50%), Gaps = 93/691 (13%)

Query: 1   MTSVNQFWRRAKLPLAVSLASTL--AGPAFGVSFNIGEIEGSFDSSLSVGASW------- 51
           M  V + + ++ L L V+ A +L        V+F+ G ++GSFDS+ + GASW       
Sbjct: 1   MKIVKKGFNKSALALGVASALSLLMVSNVNAVAFDWGAVQGSFDSTWTAGASWRVGERDW 60

Query: 52  --STAKANRDLIGVNN----------------GGRGLSQTSDDGHLNFKRGETFSKIFKG 93
                K N+     +N                     S  +D  +L + +G+T S+I KG
Sbjct: 61  AGQIGKVNQPQFDWSNYTAFGNTKYTSAEIWAQPGSYSSNNDLSNLLYSQGDTTSEIVKG 120

Query: 94  IHDLELKYGDTGVFVRGKYWYDFELKDESRLFK--------DISDNNRKEGAKSSGGQIL 145
           +H+L LKY + G+F RG Y+YD +L D +  F         D   +NR    +    ++L
Sbjct: 121 LHELSLKYENYGLFARGMYFYDRKLNDGNYDFNDPLTGKEYDPCQDNRASEVQCKDIRLL 180

Query: 146 DAFVYHNYAIAD--QPGSVRLGKQVVSWGESTFIGGGINSINPIDVSAFRRPGAEVKEGL 203
           DAFVY N+ + D   P S+R+G QVVSWGEST I  GI  INP+D++    PGAE+KE  
Sbjct: 181 DAFVYANFDLNDGANPLSIRVGNQVVSWGESTLIAHGIGEINPVDLNILNAPGAELKEAF 240

Query: 204 IPVNMFYVSQTLTDNLSAEAFYQLEWDQTVTDNCGTFFSQPDVISDG------------- 250
            P  M + S  +T+NLS EAFYQ +W+       G+ F+  D    G             
Sbjct: 241 RPQGMVWASLGITENLSVEAFYQYDWEPIWVPTPGSIFATNDFAGFGGYNQNAQLGFNAN 300

Query: 251 CDNNLR-VLNKRSRISPL-----AYPTLNALGVDVNEEGVLVRRGPDRDARDSGQFGVAM 304
            D NL  V+ +  R++ +       PT   + + +     +     ++   + GQ+G+ +
Sbjct: 301 PDINLDFVMQEYQRLAGMIASGQTIPTQQLVAMALAYPTKVTLVQDEQSPSNDGQYGIKL 360

Query: 305 HYNFEPL-DTEFGAYFMNYHSRAPIFSAQGAPASAYNRPLGGLAAL--------RPVIVA 355
            Y    L DTEFG YFMNYHSR P+ S   A  S     L  LA L        R ++++
Sbjct: 361 GYYAPELGDTEFGFYFMNYHSRRPLISGTAADFST-GALLSDLAVLGQNAGDINRDLLLS 419

Query: 356 --GSSNYFVEYPEDIRLYGLSFSTTLPTGTAWSGELSYRPNAPVQLSTTDILYAGVTPII 413
               S   + YPEDI+LYG SF+T+L   T+   E+++R + P+Q+   ++L+AG+   +
Sbjct: 420 LKSFSKAQIVYPEDIKLYGFSFNTSL-GDTSVGAEIAHRQDEPLQIDDVELLFAGMPQQL 478

Query: 414 G-------FGNASVLKG-SPGQDLHGYNRKEITQFQTTFTHFFDQVMGASRLTTVGEIGV 465
                   F   S + G  PG  + G+ R++ TQ Q TFTH F   +G   LT + E+G 
Sbjct: 479 ANAGIRPDFNGISQIDGVKPGDTVDGFIRRDTTQAQATFTHLFGPTLGLDNLTMLAEVGG 538

Query: 466 THVGGLESKSEARYGRDPVFGPGTLPGGFCNTLNNSTAVGAGLANANGLNTNCNNDGFTT 525
             +  +    E R       GPGT   G      N    G   A  NG  TN     F T
Sbjct: 539 VWIHDMPGFDELRLN-----GPGTARSG-----GNPDMPGIIQALHNGPETN----PFPT 584

Query: 526 ATSWGYRARAIWEYPDVFAGVNLKPNVAWSHDVKGYSPGPGANFEEGRKAVSLGLDAEYQ 585
             +WGYR  A  E+ ++FAGVN+ P + +SHDV G +P P   F EGRK+V+LGL+ EYQ
Sbjct: 585 DFAWGYRLVAKAEFNNLFAGVNMSPRMIFSHDVDGITPDPMFLFTEGRKSVALGLNFEYQ 644

Query: 586 NTYTASLAYTNFFGGKFST--VDDRDFVALS 614
           N + A L+Y NFFGG  +T  + DRD+++ +
Sbjct: 645 NRWGADLSYNNFFGGVGTTNAMADRDYISFN 675