Pairwise Alignments

Query, 377 a.a., branched-chain amino acid ABC transporter substrate-binding protein from Pseudomonas fluorescens SBW25

Subject, 372 a.a., high-affinity branched chain amino acid ABC transporter, periplasmic branched chain amino acid-binding protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  214 bits (544), Expect = 4e-60
 Identities = 133/370 (35%), Positives = 200/370 (54%), Gaps = 7/370 (1%)

Query: 8   KGFLALAVAAALGVSTFVQADVKIGVAGPMTGANAAFGEQYMKGAQAAADVINKAGGING 67
           K  +A    A +    F    +K+GV G  +G  A++G      A+  A + N  GGING
Sbjct: 7   KALIAGMTVAVMAGPVFAGDTIKLGVPGAHSGDLASYGLPSANAAKIVAKMFNDKGGING 66

Query: 68  EKIVLVAGDDACEPKQAVAVANRLADQDKVIGVVGHFCSSNTIPASEVYDEAGIIAITPG 127
           + + ++  DD C+P+ A   A +L   D V  V+GH CS  T  A  +Y EA  + ++P 
Sbjct: 67  KMVEVIPQDDQCKPEMATNAATKLVS-DGVDIVLGHICSGATKAALPIYKEANKVVMSPS 125

Query: 128 STNPQVTERGLGAMF-RMCGRDDQQGIVAGDYIVDVLKGKKVAVINDKDTYGKGLADATA 186
           +T P +T+ G   MF R    DDQQ  +  D+ +D L  KK+AV++DK  YGKG A+   
Sbjct: 126 ATTPALTQSGDYPMFFRTISSDDQQAKLGVDFAIDKLGAKKIAVLHDKGDYGKGYAEYAK 185

Query: 187 AQLTKRG-VKPVLEEGLTRGEKDFSALVTKIRSIGADVVYFGGLHPEAGPLVRQIREAGL 245
             + + G    VL EG+T G  D+SA+V K+RS GAD V FGG HPEA  +V Q+R+  +
Sbjct: 186 QFIEQSGKATVVLFEGVTPGAVDYSAVVQKVRSEGADAVMFGGYHPEASKIVAQMRKKRM 245

Query: 246 KAAFMSDDGVVTDELAKTAGGNQYVDGVYMTFGADPRLLPDSKAVVDDFRKA-GYEPEGY 304
              F+SDDGV  D   K AG +   +GVY +   D  +LP  K  ++  +K  G EP  +
Sbjct: 246 TTPFISDDGVKDDTFIKVAGKD--AEGVYASSSKDVSMLPMYKEAIELHKKEFGTEPGAF 303

Query: 305 TLYAYASVQALAAGFNGAKSNKGEDAAKWLKAHPVKTVMGEKTWDAKGDLKVSDYVVYQW 364
              A+A+ QAL      A S +       L+ + V+T +G+  +D +GD + + + +YQ 
Sbjct: 304 YKEAFAAAQALLTAVQRAGSTETPKVVDALRNNFVETAIGKIKFDKRGDAEGTGFSMYQ- 362

Query: 365 DKDGKYHQLE 374
            K+G Y +L+
Sbjct: 363 VKNGVYVELK 372