Pairwise Alignments

Query, 204 a.a., trimeric intracellular cation channel family protein from Pseudomonas fluorescens SBW25

Subject, 206 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

 Score =  136 bits (342), Expect = 3e-37
 Identities = 74/198 (37%), Positives = 114/198 (57%), Gaps = 1/198 (0%)

Query: 1   MLLMLYLIAITAEAMTGALSAGRRGMDWFGVVLIACVTALGGGSVRDVLLGHYPLTWVKH 60
           +L ++ +      A++G L AGR  MD FGV+++A VTA+GGG++RD+ LG  P+ W+K 
Sbjct: 5   LLYLIDMFGTAVFAVSGVLLAGRLKMDPFGVMVLASVTAIGGGTIRDMALGATPVFWIKD 64

Query: 61  PEYLVLTSVAALVTIFIAPLMRHLRSLFLAL-DAVGLVAFTLIGCMTALEMGHGMLVASV 119
             YL +  +   +T+ +    + L    L + DA+GL  F  IG   AL      L+A +
Sbjct: 65  TNYLWVIMITCALTMLLVRRPKRLAWWILPVCDAIGLAVFVGIGVEKALIYQDSALIAII 124

Query: 120 SGVITGVFGGILRDIFCNDIPLIFRRELYASVSFLAAWFYLLCLYLELPSEQAILLTLFS 179
            GVITG  GGI+RD+   +IP++ R E+YA+   +   F+   L +   S  A+L  +FS
Sbjct: 125 MGVITGCGGGIIRDVLAREIPMVLRSEVYATACIIGGIFHTTALAMGYSSSTALLSGVFS 184

Query: 180 GFLLRLLAIRFHWEMPKF 197
             L+RL AIR+H  +P F
Sbjct: 185 TLLIRLGAIRWHLSLPTF 202



 Score = 26.2 bits (56), Expect = 4e-04
 Identities = 14/61 (22%), Positives = 26/61 (42%)

Query: 86  SLFLALDAVGLVAFTLIGCMTALEMGHGMLVASVSGVITGVFGGILRDIFCNDIPLIFRR 145
           SL   +D  G   F + G + A  +        V   +T + GG +RD+     P+ + +
Sbjct: 4   SLLYLIDMFGTAVFAVSGVLLAGRLKMDPFGVMVLASVTAIGGGTIRDMALGATPVFWIK 63

Query: 146 E 146
           +
Sbjct: 64  D 64