Pairwise Alignments

Query, 739 a.a., primosomal protein N' from Pseudomonas fluorescens SBW25

Subject, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

 Score =  672 bits (1733), Expect = 0.0
 Identities = 364/740 (49%), Positives = 477/740 (64%), Gaps = 9/740 (1%)

Query: 1   MPDAILRLALPSPLRRLFDYRAPAGVLRAQLQPGMRVRVPFGRREMIGILVEIADHSEVP 60
           M  +I R+ LP PL + FDY  PA +       G RV+VPFGR+ ++GI+  +   S+ P
Sbjct: 1   MRPSIARVCLPVPLDKSFDYLIPAHLFPVL---GGRVQVPFGRQTLVGIVQSLTHQSDFP 57

Query: 61  AEKLKPALAILDATPPLPPALFKLCLWTAQYYQHSLGDTLSWALPVLLRQGELAEARQER 120
            E+LK   A+LD  P  P  L  L  W +Q+Y + LG+T + ALP  LR+G+ AE    +
Sbjct: 58  IEQLKSVQAVLDDAPVWPDKLQSLLHWCSQFYHYPLGETYANALPGALRKGKAAELTSHK 117

Query: 121 FWSMVP-GARLDDPRIARAPRQREALATLAQHPHGVAHQLLSKLMLSKDSLDLLLAKGMV 179
            W +   G       + R   ++  +  L QH   ++HQ L    +S  +L  L+ KG +
Sbjct: 118 EWRLTALGQEQLMQGVKRGAVKQAQVLHLLQHG-ALSHQTLLDEEVSSTTLKALVEKGWI 176

Query: 180 QVEIRKHAPDARHEHWLAQPELP-LNPEQRAAYEAIRAGFDSFHAFLLAGVTGSGKTEVY 238
           + E RK       +   A+ + P LN EQ  A  A+ +    F  FLL GVTGSGKTEVY
Sbjct: 177 ECEERKPVARPWPQELEAKVDKPRLNQEQAIAIAAVNSQ-QGFGCFLLEGVTGSGKTEVY 235

Query: 239 LQLIRETLQAGKQALVLIPEINLGPQTLARFEQRFNARIALVHSAVNDRERLESWLAARD 298
           L LI   L  G+QALVL+PEI L PQT+ RF QRFN  + ++HSA+ND ERL +WLAARD
Sbjct: 236 LNLITPVLARGEQALVLVPEIGLTPQTINRFRQRFNVPVEVMHSALNDTERLNAWLAARD 295

Query: 299 GDADIIIGTRSALFTPMKNPGLIIIDEEHDGSYKQQEGLRYHARDLALVRARQEDIPIVL 358
             A I+IGTRSAL TP    G+II+DEEHD SYKQQ+ LRYHARD+A++RA  E+IPIVL
Sbjct: 296 KVAGIVIGTRSALLTPFAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVL 355

Query: 359 GSATPSLESLHNAYTGRYGLLRLNERAGGAKQPRFLRLDVKSRPLDSGISGPMQQAIGQT 418
           GSATP+LE+LHNA +G+Y  L+L +RAG A   R   LDVK   L+SG+S P+   + + 
Sbjct: 356 GSATPALETLHNALSGKYHHLQLTQRAGNALPTRNHALDVKGLYLESGLSAPLIAEMRRH 415

Query: 419 LAAGQQVLVFLNRRGFAPTLLCHDCGWMSECERCDARMTVHQRHGELRCHHCGHVERVPR 478
           L+AG QV++FLNRRGF+P L+CH+CGW++EC+RCDA  T HQ   E+RCHHCG    V  
Sbjct: 416 LSAGNQVMLFLNRRGFSPALMCHECGWIAECQRCDAYYTYHQHSNEMRCHHCGSQRPVLH 475

Query: 479 HCPQCGKVDLRPVGAGTERAEERLGILFPDYPVLRVDRDSTSRKDAMNQLFATIQKGQPC 538
            C  CG   L  VG GTE+ E +L  LFP+Y  +R+DRDST RK ++      I+KG+  
Sbjct: 476 QCKGCGSTQLVTVGVGTEQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIRKGEYQ 535

Query: 539 ILIGTQMLAKGHHFPRVTLVSILDADGGLFSGDFRASERMAQLIVQVAGRAGRAEEPGRV 598
           ILIGTQMLAKGHHFP VTLV++LD DG L+S DFRASER+AQL +QVAGRAGRA +PG V
Sbjct: 536 ILIGTQMLAKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEV 595

Query: 599 IIQTHLADHPLLIQLTEQGYFAFAEQALSERRAAGLPPFSHLALLRAEAHKPGQAESFLD 658
           ++QTH  +H LL  L  + Y  FA  AL ER+ A LPP+S L+L RAEA+   Q E FL 
Sbjct: 596 VLQTHHPEHSLLQALLHKDYHHFALTALEERKLAQLPPYSFLSLFRAEANHTAQVEDFLR 655

Query: 659 EACSAAERLLGELGLSGIELLGPVPAPMERRAGRYRAQLLLQATSRAPLHRLLSSWLLAL 718
           +              S   +LGP PAP+ +RAG++R QLLLQ  +R  + ++L S   AL
Sbjct: 656 QVRETLR--CNPWFDSECMVLGPTPAPLAKRAGKFRWQLLLQTPNRTLMQKILQSARPAL 713

Query: 719 EQMPSGRQVRWSLDVDPVDL 738
           +Q+P   +VRWS+D+DP DL
Sbjct: 714 QQLPLASKVRWSIDIDPQDL 733