Pairwise Alignments

Query, 299 a.a., LysR family transcriptional regulator from Pseudomonas fluorescens SBW25

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella loihica PV-4

 Score =  187 bits (475), Expect = 3e-52
 Identities = 103/299 (34%), Positives = 161/299 (53%), Gaps = 2/299 (0%)

Query: 1   MRRKIPSTTALVSFEAAARHESFTKAAQELLITQGAICRQIASLEEFLSVELFRRSRRGV 60
           M R++P   A+ +FEAAARH SFT+AA+EL +TQ A+  QI +LEE+L ++LFRR  R +
Sbjct: 1   MSRRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEYLGLKLFRRKNRSL 60

Query: 61  KLTEAGLSYSRRVATQLDAVERDTLSVMGQQGANTIELAVVPTFGTQWLIPRLKDFQRQH 120
            LTE G  Y   +      +   T  ++ +    ++ ++  P+F  QWL+PRL +F   +
Sbjct: 61  LLTEEGQGYFLDIKDIFVQLADATDRLLARSAIGSLTVSTSPSFAIQWLVPRLANFSENN 120

Query: 121 PEVTVNLTNRTRPFLFADTEFDAAIYFGDADWSGTESHRLMGENPVPVCSPRLL-GSRTR 179
           P++ V +            + D AIY+G  +W G  + +L  E  +PVCSP LL G +  
Sbjct: 121 PDIDVRIKAVDDETSSLTDDVDVAIYYGMGNWPGLRADKLRNEVLIPVCSPMLLSGPKPL 180

Query: 180 FSPQEIAELPLLQQTTRPYAWRQWFNAQQLNIPRDMTGPRYELFSMLSQAAMHDMGIALI 239
             P ++    LL  ++R + W+ WF    +N      GP +   S++ QAA H  G+AL 
Sbjct: 181 SQPSDLKHHTLLHDSSR-HDWQAWFRQCGINDINVNQGPIFSHSSLVLQAAAHGQGVALG 239

Query: 240 PPFLIQRELEEGQLLIASPEALSSSKAYYLMIPDKKVESASLHAFRDWLIDQSQRYSPS 298
              L + +++ G+L+   PE L S  AYYL+      E   + AFR W++D  +  S S
Sbjct: 240 YSVLARPDIKAGRLVCPFPEVLVSKNAYYLVCQQNHAEIGKIVAFRKWMLDMFEEESRS 298