Pairwise Alignments

Query, 925 a.a., DNA polymerase I from Pseudomonas fluorescens SBW25

Subject, 924 a.a., DNA polymerase A (NCBI) from Rhodospirillum rubrum S1H

 Score =  639 bits (1647), Expect = 0.0
 Identities = 388/940 (41%), Positives = 537/940 (57%), Gaps = 42/940 (4%)

Query: 6   LVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFDAKGGT 65
           L LVDGS Y++RA+H+LPP+T + G P  AV G   ML  L         AV+FD    +
Sbjct: 7   LYLVDGSGYIFRAYHSLPPMTRTDGTPVNAVYGFTAMLMKLLADMDADHLAVIFDKARVS 66

Query: 66  FRDDMYAEYKANRPSMPDDMRLQIEPLHQSVIALGFPLLCVEGVEADDVIGTLARSSAAA 125
           FR+++Y  YKA RP  P+D+  Q   + ++V A   P +  +G EADD+I T A+ + A 
Sbjct: 67  FRNEIYPLYKAQRPPPPEDLIPQFPLIREAVRAFNVPCIERDGFEADDLIATYAKRARAE 126

Query: 126 DRPVVISTGDKDMAQLVDGHITLVNTMTGSAMDIEGVKEKFGVAPEQIIDYLALMGDSSD 185
              V + + DKD+ QLV   + L + M   A+    V EKFGVAP+++ID  AL GD+ D
Sbjct: 127 GAIVTVVSSDKDLMQLVGEGVALFDPMKNRAIGPAEVFEKFGVAPDKVIDVQALAGDAVD 186

Query: 186 NIPGVPGIGPKTASGLLVGVNGGLKELYEQLDIVPTLPIRGAKTLPAKLEEHKEMAFLSY 245
           N+PGVPGIG KTA+ L +G  G L+ L     +     I+  K   + L+ H E A +S 
Sbjct: 187 NVPGVPGIGVKTAAQL-IGEYGDLETL-----LARAAEIKQPKRRQSLLD-HAEAARISL 239

Query: 246 QLATIKIDVPLDVGLDDLHLIEPDREKLLELYTLLEFKSWFDEIQRDAKRVELKAAPVVE 305
           QL  ++ DV +   L D    EPD E L        F+S    +   A     KA    +
Sbjct: 240 QLVRLRDDVEVSETLADFATAEPDAEVLAGFLAENGFRSLLARVTAVA---HAKAGTTPQ 296

Query: 306 DVAEVAAPAEATYTTILDQATFDIWLKKLNDAKLFAFDTETTGIDAQQAQLVGVSFAVQP 365
             A   APA+  Y  +   A   +W+ K   A L A DTET  + A++A LVGVS A+ P
Sbjct: 297 PAA---APADDDYVLVNTLAELGVWIAKARAAGLVAIDTETDSLKARRATLVGVSLAITP 353

Query: 366 HEAAYIPLTHA--------YIGAPEQL----DRDTVLLALKPLLEDPTKLKVGQHAKFDM 413
             A YIP  H         + GA   +    D+   L  L  LL DP  LKVG + KFD+
Sbjct: 354 GRACYIPFAHGLRKAEGLDFDGAAPPVANIEDKAAALALLGDLLRDPGVLKVGHNLKFDL 413

Query: 414 NILANCAIGGDPAHGITVRGIAFDTMLESYVLNATATRHDMDSLAKKYLDYDTVAFQDIA 473
           ++LAN         G++      DTM+ SYVL+ T   H MD LA  +L   T+ F+++ 
Sbjct: 414 HVLANA--------GLSDVAPVDDTMVLSYVLDGTLHGHGMDELAGLHLGRRTITFEEVC 465

Query: 474 GKGAKQLTFDQIALEQAGPYAAEDADVTLRLHQALFAQLSAIPSLASVLTDIEIPLVPVL 533
           GKG  Q+TFDQ+ L++A  YAAEDADVTLRL+  L  +L     +  V   ++ P+V +L
Sbjct: 466 GKGKGQITFDQVPLDKAVAYAAEDADVTLRLYLLLRDRLLK-EHMVRVHETLDRPMVRIL 524

Query: 534 ARIERQGALVDKDLLGIQSIELGNKMVELERQAFEIAGEEFNLGSPKQLGAILYEKLGLP 593
             +E  G  VD   L   S +   +M +LE Q   +AG  FN+ SPKQLG +L+E++ L 
Sbjct: 525 TDMEAAGVRVDALRLKALSGDFAKRMGDLEDQIHALAGHAFNVASPKQLGEVLFEEMSLT 584

Query: 594 VLKKTGK-GQASTAEEVLAKLAEDDYPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRI 652
             KK+ K G  ST  +VL +LA + + LP  ++ +R  +KLK TYTD L  +I+ RTGR+
Sbjct: 585 GGKKSRKTGAWSTDAQVLDQLAAEGHDLPARVLDWRQYAKLKGTYTDALVAEIDERTGRV 644

Query: 653 HTSYHQAVAATGRLSSSDPNLQNIPVRTAEGRRIRQAFIAPKGYKMLAADYSQIELRIMA 712
           HT+Y   V ATGRLSS+DPNLQNIPVR+  GR+IR+AFIA  G+ +++ADYSQIELR++A
Sbjct: 645 HTTYGLTVTATGRLSSNDPNLQNIPVRSEAGRKIREAFIAAPGHLLISADYSQIELRLVA 704

Query: 713 HLSKDEGLMNAFRHNLDVHTATAAEVFKVELGDVTSDQRRSAKAINFGLIYGMGAQKLGK 772
           H++    L  AF    D+H  TA++VF V +  +    RR AKAINFG+IYG+ A  L +
Sbjct: 705 HVAGITALRQAFAEGKDIHAITASQVFGVPVEGMDPMVRRQAKAINFGIIYGISAHGLAQ 764

Query: 773 DIGVDTKTAKAYIDVYFARYPGVREYMERTRAQASDQGYVETFFGRRLYLPDIHSNKPQE 832
            +GV    A A+I  YFAR+P +R YME  + +A   G+V T FGRR+ +P I    P  
Sbjct: 765 QLGVGRPEAAAFITAYFARFPEIRSYMETVKEEARTVGWVATPFGRRIPIPGIQDKNPAA 824

Query: 833 RAAAERTAINAPMQGTAADIIKKAMVLVDNWLTDSGLDAKVILQVHDELVLEVREDLVAE 892
           RA AER AINAP+QG AADIIK+AM+ +   L  +GL  +++LQVHDEL+ E  E     
Sbjct: 825 RAFAERQAINAPIQGGAADIIKRAMIALPPALEQAGLATRMLLQVHDELIFEAPEAEAET 884

Query: 893 VSEKIREYMSAAAQL-------DVPLLVEVGVGDNWDQAH 925
            +  ++  M  A  L        VPL V+ G+  +W +AH
Sbjct: 885 AAALVKRVMETAVTLTDDQGERTVPLEVDTGIAASWAEAH 924