Pairwise Alignments

Query, 203 a.a., tyrosine-type recombinase/integrase from Paraburkholderia sabiae LMG 24235

Subject, 305 a.a., site-specific tyrosine recombinase XerD from Rhodanobacter denitrificans FW104-10B01

 Score = 88.6 bits (218), Expect = 1e-22
 Identities = 61/164 (37%), Positives = 85/164 (51%), Gaps = 9/164 (5%)

Query: 1   MNAVDRTTVPGRRDYALFSLMFNTGARVQEVPDLRLCDLRLQRPCQVRLQGKGNKVRVCP 60
           + A D  T  G RD A+  LM+ +G RV E+ +L L  L   R   +R+ GKG K R+ P
Sbjct: 129 LGAPDTGTTLGLRDRAMLELMYASGLRVSELVELPLAALN-PRQGVLRVTGKGGKDRLVP 187

Query: 61  IWPQT-ARLLQRLVEERPYALDATT--ALFVNNRGDKLTRFGVYYLLRRHLATAEANVPT 117
           +  +  AR+   L+E RP         ALF++ RG+ +TR   + L++R+      N   
Sbjct: 188 VGEEALARIGTYLIEARPALAKGRQPPALFLSQRGEGMTRQMFWTLVKRYALKVGIN--- 244

Query: 118 LREKRIHPHSLRHTTALSLLKSGVDFPTISQWLGHASLDTTMRY 161
              KRI PH LRH+ A  LL  G D   +   LGH+SL TT  Y
Sbjct: 245 --PKRISPHVLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIY 286