Pairwise Alignments

Query, 391 a.a., efflux RND transporter periplasmic adaptor subunit from Paraburkholderia sabiae LMG 24235

Subject, 398 a.a., Secretion protein HlyD (NCBI) from Rhodospirillum rubrum S1H

 Score =  311 bits (797), Expect = 2e-89
 Identities = 171/392 (43%), Positives = 244/392 (62%), Gaps = 8/392 (2%)

Query: 5   LKRLSVAVSAVAVLGAAAGAGLVRGVGPGAVADARAADAPAPAVEVDVATVLSRTVTDWQ 64
           +K  +V +  V ++  A G G+V   G G  A A+A   PA A  V V T+  R V  W 
Sbjct: 8   VKGRAVLLGTVGLILLAGGVGVVLDRGVGVPAQAQA---PAQAPRVGVQTLTPRQVQVWS 64

Query: 65  SYSGRLEAVDHVDVRPLVSGTIVAIHFTDGALVKKGEPLFSIDPRPYQAEVDRAAAQVAA 124
           S+SGRL AVD  ++RP V G +  + F DG  V  G+ LF IDP PY+A + +A A + +
Sbjct: 65  SFSGRLRAVDLAEIRPEVGGRLTEVRFRDGQTVAVGDVLFVIDPAPYEAAMAKAEASLTS 124

Query: 125 AKARALYTSTDAARAERLLVDNAIAKRDYDEKQNAAREASAAVKAADAAFEAAQVSLGYT 184
           A+  A +  T+  RA  L+    IA+R YDE+ NA R A AAV  A+A  + A++ L +T
Sbjct: 125 ARTNAAFARTELNRAVSLVKTQTIAQRLYDERANANRLAQAAVLVAEAEVKRARIDLDHT 184

Query: 185 TITAPVSGRVSRAELTVGNVVSAGANAPLLTTLVSVSPIYASFDVDEQTYL-----RYLG 239
            + AP++GRVSRAE+TVGNVV  GA APLLT++VS   +YA F+VDEQTY+     R   
Sbjct: 185 RVKAPIAGRVSRAEITVGNVVQPGAGAPLLTSIVSNDGLYADFEVDEQTYMSGIRARGPS 244

Query: 240 RDRQAKVPVALGLANEDGYSRKGTISSVDNRLDTQSATIRVRATIDNRDGALVPGLYARV 299
           RD++ ++PV +    ++ +   GTI S DNR+D+ + TIR RA + N DGAL+PG++  V
Sbjct: 245 RDQENRIPVQITAQGDEAHPYGGTIHSFDNRIDSATGTIRARALLANEDGALMPGMFVSV 304

Query: 300 KVGGGDAHPAVLIDDAAIGTDQSKKYVLVVNDVNKVQYREVQLGALHDNLRVIDAGLKPG 359
           KV  G    A+++ + AIG DQSKK+V VV +  KV YREV LGA  +  R++ +GL+ G
Sbjct: 305 KVASGGGAGALMVQERAIGNDQSKKFVYVVGEDAKVAYREVDLGARVEGERIVLSGLRAG 364

Query: 360 ERIVVNGLMRARPNDTVKPHPVDMTDAARSAA 391
           ER++V+GL + RP  TV+     +  A+R+ A
Sbjct: 365 ERVIVDGLQQVRPTMTVEIKEAGLETASRALA 396