Pairwise Alignments

Query, 309 a.a., LysR substrate-binding domain-containing protein from Paraburkholderia sabiae LMG 24235

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella loihica PV-4

 Score =  134 bits (337), Expect = 3e-36
 Identities = 96/291 (32%), Positives = 139/291 (47%), Gaps = 5/291 (1%)

Query: 12  RIVPSLTALVEFEAVGRLGSFTFAATELGVTQSAVSRQIRFLEETLDVRLFQRGHRSIKL 71
           R +P L A+  FEA  R  SFT AA EL VTQ+AVS QI+ LEE L ++LF+R +RS+ L
Sbjct: 3   RRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEYLGLKLFRRKNRSLLL 62

Query: 72  TAEGEALYQVVAESMQKIAGVFDRLSTTGVEQSELVLASTAAFSQFRLLPRLANLKRLNP 131
           T EG+  +  + +   ++A   DRL       S L ++++ +F+   L+PRLAN    NP
Sbjct: 63  TEEGQGYFLDIKDIFVQLADATDRLLARSAIGS-LTVSTSPSFAIQWLVPRLANFSENNP 121

Query: 132 PLQLRLTTQMFTADLRHVEVDAAVRYGNGQWTDGTSTLLFDVDIFPVCSPRFLEENGVPT 191
            + +R+            +VD A+ YG G W    +  L +  + PVCSP  L      +
Sbjct: 122 DIDVRIKAVDDETSSLTDDVDVAIYYGMGNWPGLRADKLRNEVLIPVCSPMLLSGPKPLS 181

Query: 192 SLEQLASMALVESDSTAEGWMDWTEWFRAVGYRPSRLNKVLRCSLYTDAVQAARYGQGIA 251
               L    L+   S      DW  WFR  G     +N+    S  +  +QAA +GQG+A
Sbjct: 182 QPSDLKHHTLLHDSSR----HDWQAWFRQCGINDINVNQGPIFSHSSLVLQAAAHGQGVA 237

Query: 252 LGWSRLVDDLLMTGELVRIEVATFTPAECYFLVVPHGRTISPVITQLIEWL 302
           LG+S L    +  G LV            Y+LV          I    +W+
Sbjct: 238 LGYSVLARPDIKAGRLVCPFPEVLVSKNAYYLVCQQNHAEIGKIVAFRKWM 288