Pairwise Alignments

Query, 314 a.a., substrate-binding domain-containing protein from Paraburkholderia sabiae LMG 24235

Subject, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

 Score =  144 bits (363), Expect = 3e-39
 Identities = 94/300 (31%), Positives = 170/300 (56%), Gaps = 13/300 (4%)

Query: 8   RRVLTIVATATVAT-YSLCAMADDKIVIGFSQSTLNHPWRIAQTEGNKKYAASHYPDVKL 66
           +++ T+++ A ++T  S  A A D + I  S  TLN+P+ +   +G +  A +      L
Sbjct: 4   KKLTTLISAALLSTSVSFVAQAQDTVAIVLS--TLNNPFFVTMKDGAE--AKAKELGYNL 59

Query: 67  IVTDGQNNATRQTADVESLMAQGVKVLMISPLTQQALTPVVKQAMDHGIKVVTLDRRVNT 126
           IV D QN+ +++ ++VE L  +GVK ++I+P    A++  ++ A    I V+TLDR  + 
Sbjct: 60  IVLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASR 119

Query: 127 -PVTVHVGPEDLPIGRQAGELIAKKLNGQGAIIEIGGTAGASVSIDRDKGFREAIAKYPG 185
             V  H+  +++  G  AG  I  K+     +I++ G AG S + +R +GF  A+ K   
Sbjct: 120 GEVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAV-KGSK 178

Query: 186 LRIVAFQNCDFLREQSMKFMEDQIQRFKPGEIKAVYAHDDEMALGAIQALEAAGRLNGII 245
           ++++A Q  DF R + +  ME+ +      +++AV+A +DEMALGA++A++A+G+   ++
Sbjct: 179 MQLLASQPADFDRTKGLNVMENLLA--ANPDVQAVFAQNDEMALGALRAIQASGK--SVM 234

Query: 246 VVGINGANNAIQSVAEGKLTATFIY--PFVAPEGIQTAYKVARGEPVPKDIKLQSTLITK 303
           +VG +G ++ I +V  G+L AT       +   GI+TA K+ +GE V   I +   +I K
Sbjct: 235 IVGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEAYIPVALKVIAK 294