Pairwise Alignments

Query, 818 a.a., ribonuclease R from Paraburkholderia sabiae LMG 24235

Subject, 718 a.a., ribonuclease R (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  360 bits (924), Expect = e-103
 Identities = 224/693 (32%), Positives = 360/693 (51%), Gaps = 51/693 (7%)

Query: 54  DGQIRLDQRGHYQLTHPSNFVAGRVQGHRDGYGFLIRDDGQDDLFLPTGEMQKVMHNDRV 113
           D  I   ++G ++L +    + G  Q   +G    I + G D +F+        M+ND+V
Sbjct: 67  DDYISEIEKGKFRLNNHGTEMIGTFQRKSNGKNSFIPEGGGDPIFVAERNSAHAMNNDKV 126

Query: 114 LARIVGYDRRGRPEGHIVEVTDRANKRVIGRLLNENGALIVVPEEKRIGHDILIT-QNTK 172
                   +    EG ++E+ +RAN   +G L        +V E + + +DI I  +  K
Sbjct: 127 KITFYAKRKNKDAEGEVIEILERANDTFVGTLEVAKSYAFLVTENRTLANDIFIPKEKLK 186

Query: 173 KAKVGQVVVVELTDFPSRHSQPLGRVVEVLGDIDDPGMEIEIAVRKYGVPHEFSQAALDA 232
             K G   +V++T++P +   P+G+V+++LG   D   E+   + ++G+P+ + +A   A
Sbjct: 187 GGKTGDKAIVKVTEWPDKAKNPIGQVIDILGVAGDNTTEMHAILAEFGLPYVYPKAVETA 246

Query: 233 AAKLPDEVRPVDIKHRVDLRDVPLVTIDGEDARDFDDAVYCEPVKVGRGEGFRLIVAIAD 292
           A K+P E+ P +I  R D R V   TID +DA+DFDDA+   P+K G  E   + V IAD
Sbjct: 247 ADKIPAEITPEEIARREDFRKVTTFTIDPKDAKDFDDALSIRPIKDGLWE---VGVHIAD 303

Query: 293 VSHYVLPDGGLDVDAIERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLVCDVVITA 352
           V+HYV   G +D +A +R+TSVY   R IPMLPE+L N +CSL P  ++        IT 
Sbjct: 304 VTHYVKEGGIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITE 363

Query: 353 RGEIKAYQFYPGVMHSAARLTYTEVAAVLTNTKGPEATRRAALLPHLQNLYGVYKALFAA 412
           +GE++  +    V++S  R TY E   ++        T+       +  L  + KAL   
Sbjct: 364 KGEVRDSRIVHTVINSDRRFTYEEAQQII-------ETKTGDFKEEVLMLDTIAKALREK 416

Query: 413 RQKRGAIDFDTTETYIVCNAQGKIEQIVPRHRNDAHKLIEECMLAANVCAADFMKR---N 469
           R   GAI+FD  E     + +GK   +  +   DA+KL+EE ML AN   A+ + R   N
Sbjct: 417 RFAAGAINFDRYEVKFEIDEKGKPISVYFKESKDANKLVEEFMLLANRTVAEKVGRVPKN 476

Query: 470 KHPGL--YRVHAGPTTERLENLRTFLRGMG--LTLGGGDTPHASDYAALMAHIRDRPDAQ 525
           K P +  YR+H  P  E+LENL  F+   G  +   G  T  +     L+  I  + +  
Sbjct: 477 KKPKVLPYRIHDLPDPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEEN 536

Query: 526 MLQTMLLRSMQQAVYSPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIYAILQGRKYEP 585
           +++T+ +R+MQ+A YS  NIGH+GLA++ Y HFTSPIRR+PD++ HR +   + G     
Sbjct: 537 LIETVSIRAMQKARYSTHNIGHYGLAFDYYTHFTSPIRRFPDMMVHRLVTKYMDG----- 591

Query: 586 KAPHGVELNTALSPRARAMQAEDEKRTGRGRPNTAIWEELGMHCSANERRADEASRDVEA 645
                                      GR   + + +E+L  H S  E+ A  A R    
Sbjct: 592 ---------------------------GRS-VSESKYEDLCDHSSNMEQIAANAERASIK 623

Query: 646 WLKCYFMRDKLGEEYGGMVSGVTSFGIFVQLDALFIEGLVHVTELGSDYFQYDEIKNELR 705
           + +  FM ++LG+ Y G++SGVT +G++V+L+    EG+V + +L  DY+++DE    LR
Sbjct: 624 YKQVEFMSERLGQIYDGVISGVTEWGLYVELNENKCEGMVPIRDLDDDYYEFDEKNYCLR 683

Query: 706 GERTGIRYRLSDRVRVQVSRVDLDARKIDFRLV 738
           G R    Y L D + ++V+R +L+ +++DF L+
Sbjct: 684 GRRKNKIYSLGDAITIRVARANLEKKQLDFALI 716