Pairwise Alignments

Query, 207 a.a., RNA polymerase factor sigma-70 from Paraburkholderia sabiae LMG 24235

Subject, 182 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 55.5 bits (132), Expect = 6e-13
 Identities = 41/149 (27%), Positives = 77/149 (51%), Gaps = 9/149 (6%)

Query: 31  LIQLARSFVGCSSRAEDVVHDVFIKLTGFPNQD---DVRQPLAYVARMVRNASIDACRRQ 87
           L ++A  +V     ++++V D+F+KL  +  +D   DV+    Y   +V+NAS++   ++
Sbjct: 33  LFRIAYYYVKQEEWSQEIVLDIFLKL--WKQRDTLLDVKNIEDYCFILVKNASLNYLEKE 90

Query: 88  SLENTWHTCEEDGLEVPSPEP-TPESALMTRDSLRHAFDALAQLPERTRSAFERVRLREE 146
           S   T H+   D L  P  +  +PE +L++ +       AL +LPER R  F R+R  ++
Sbjct: 91  SKYTTIHS---DSLPEPQEQSYSPEESLISEELFAIYVKALDRLPERCREIFIRIREEKQ 147

Query: 147 TLQETARALNVSQTLVHFMVRDAAKHCEE 175
           +  + A  L++S   V   ++ A    +E
Sbjct: 148 SYAQVAEELDISIKTVDAQLQKAVSRLKE 176