Pairwise Alignments

Query, 565 a.a., DEAD/DEAH box helicase from Paraburkholderia sabiae LMG 24235

Subject, 533 a.a., DEAD-box ATP dependent DNA helicase (RefSeq) from Shewanella amazonensis SB2B

 Score =  315 bits (806), Expect = 4e-90
 Identities = 204/532 (38%), Positives = 283/532 (53%), Gaps = 43/532 (8%)

Query: 37  TFAELGLSAEIVSALTAAGYKNPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96
           +FA LGLSA I+ AL   GYK P+P+Q +AIP  + GRDLL ++ TG+GKTA F LP +E
Sbjct: 2   SFASLGLSAPILKALDHKGYKTPSPIQAQAIPVVLEGRDLLAAAQTGTGKTAGFTLPLLE 61

Query: 97  RFAQLQKAQTSQPREPRESNAAGARGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 156
             +Q QKA   Q R                       L+LTPTRELA Q+    + Y K+
Sbjct: 62  LLSQTQKAGPKQVRA----------------------LILTPTRELAAQIADNITAYSKY 99

Query: 157 LRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSQLQMLVLDEADR 216
           L  L++  + GGV  G Q+  L +  +ILVATPGRLLD  ++  +    L++LVLDEADR
Sbjct: 100 LP-LKSTVVFGGVGIGPQITTLRRGIDILVATPGRLLDLHQQNAVSFHGLEILVLDEADR 158

Query: 217 MLDMGFIDDIETIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIKQHIEQRTNI 276
           MLDMGFI DI+ I+   PA RQ +LFSAT   +I +L   LL +   + +        ++
Sbjct: 159 MLDMGFIHDIKRILKLLPAKRQNLLFSATFSPEIRTLAHGLLHNAAEVSVTPRNSAAESV 218

Query: 277 AQTVHYVDDRDHKDRLLDHLLRADGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDL 336
            Q +  VD ++ K  LL  L R     Q +VF  TK  A++L  ++   G ++AA+HG+ 
Sbjct: 219 KQWIVPVD-KNQKPALLAELTRFYRWQQVLVFCRTKHGANRLVRQMDAEGIKAAAIHGNK 277

Query: 337 PQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRA 396
            Q AR + +   +   +R+L+ATD+AARGIDI  + +V N++LP   EDYVHRIGRTGRA
Sbjct: 278 SQNARTQALADFKRGAIRMLIATDIAARGIDISELPNVVNFELPHVPEDYVHRIGRTGRA 337

Query: 397 GRSGIAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEP-RKSPPANGRGGFGGRGRPGG 455
           G SG A SLV + E   L+ IER ++  LP     GFEP    PP+  +    G+ +PGG
Sbjct: 338 GASGEAASLVCNEEAKQLRDIERLIKQSLPRKEFVGFEPVHGLPPSENQ----GKSKPGG 393

Query: 456 GNGGGRRFGGKPG-YGGSRDGNGGGYGSRDGNRGGYGARDGGNGGNGGNSAGRSWGDKPA 514
                 + G KPG     R   G    ++   R G  A++             S  ++P 
Sbjct: 394 S-----KQGAKPGNKSQGRKPQGQSRNAQPKQRQGSRAQE----ERSQQDKNPSRSEQPR 444

Query: 515 GGNREGGYNSGSREGGYRSEGYRGNREGGYSRDGGYGAR----RNDGPRNSR 562
              R        R    R+ G +   +   S +G   AR    RND PR+ R
Sbjct: 445 RERRGNDQARSERPHSARAHGDKARSDNARSENGRSDARTDSARNDKPRSDR 496