Pairwise Alignments

Query, 192 a.a., RNA polymerase subunit sigma-24 from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

 Score = 61.6 bits (148), Expect = 8e-15
 Identities = 42/180 (23%), Positives = 81/180 (45%), Gaps = 12/180 (6%)

Query: 11  EEKLIDGCIAGKRDMQRLLYDLYSKKMMAVCLRYAPTTFEAEDIMQDAFVKVFNNLQTFK 70
           ++ LI+    G +    LL   Y  K+  +  RY   + +  D+ Q+AF+K +  + TF+
Sbjct: 7   DQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPTFR 66

Query: 71  RDCPVEFWIRRIMINTALKHL--RSKQLLTVSHESEEVANLSADD----------VNLSG 118
            +     W+ RI +NTA  H+  +S++      ++EE       D          + LS 
Sbjct: 67  GESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNPENITLSK 126

Query: 119 YSLDELLSMIQSLAPRYRMVFNLYAIEGYNHKEIGEMLGISEGTSKSQYSRARVILQNML 178
                +   I +L    +    L  ++G +++EI E++    GT +S+  RAR  ++  +
Sbjct: 127 ELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAREAVEKKI 186