Pairwise Alignments

Query, 192 a.a., RNA polymerase subunit sigma-24 from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 227 a.a., RNA polymerase sigma factor from Sinorhizobium meliloti 1021

 Score = 75.9 bits (185), Expect = 5e-19
 Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 17/170 (10%)

Query: 27  RLLYDLYSKKMMAVCLRYAPTTFEAEDIMQDAFVKVFNNLQTFKRDCPVEFWIRRIMINT 86
           R +   +++K+  +         +AED++Q+A+V+ F   + F+ D  +  W+ RI+IN 
Sbjct: 23  RAIMQAHNRKLYRIARSILRNDSDAEDVLQEAYVRAFTRFEDFRGDAAITTWLARIVINE 82

Query: 87  ALKHL----RSKQLLTVSHESEEVANLSADDVNLSGYS-----------LDELLSMIQSL 131
           AL  L    R  +L     +S+E A + A  +N SG S           LD +  +   L
Sbjct: 83  ALGRLRKGRRQMRLAKYMRQSQE-AEIIAFPLN-SGISDPEKTMAQRQILDLVERLTDDL 140

Query: 132 APRYRMVFNLYAIEGYNHKEIGEMLGISEGTSKSQYSRARVILQNMLLRQ 181
              YR VF L  IEG +++E   +LG+   T++++  RAR IL+  L RQ
Sbjct: 141 PDTYRTVFVLRVIEGLDNEEAAALLGLKPETARTRLHRARRILKEQLERQ 190