Pairwise Alignments

Query, 192 a.a., RNA polymerase subunit sigma-24 from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 199 a.a., RNA polymerase sigma factor RpoE from Burkholderia phytofirmans PsJN

 Score = 70.5 bits (171), Expect = 2e-17
 Identities = 49/177 (27%), Positives = 81/177 (45%), Gaps = 13/177 (7%)

Query: 8   KSDEEKLIDGCIAGKRDMQRLLYDLYSKKMMAVCLRYAPTTFEAEDIMQDAFVKVFNNLQ 67
           K  ++ L++    G +    LL   Y +K++ +  R      E ED+ QDAF+K +  L 
Sbjct: 4   KEIDQVLVERVQKGDKAAFELLVSKYHRKILRLISRLVRDPAEVEDVAQDAFIKAYRALP 63

Query: 68  TFKRDCPVEFWIRRIMINTALKHL--RSKQLLTVSHESEEVANLSADDVNLSGYSLDELL 125
            F+ +     W+ RI +NTA  +L  + ++  T +    E A   +D   L   +  E +
Sbjct: 64  QFRGESAFYTWLYRIAVNTAKNYLATQGRRAPTSTEADAEEAETFSDADQLRDINTPESM 123

Query: 126 SMIQSLA-----------PRYRMVFNLYAIEGYNHKEIGEMLGISEGTSKSQYSRAR 171
            M + +A              R    L  IEG +++EI EM+G   GT +S+  RAR
Sbjct: 124 LMSKQIAETVNAAMAVLPEELRTAITLREIEGLSYEEIAEMMGCPIGTVRSRIFRAR 180