Pairwise Alignments

Query, 480 a.a., RNA polymerase sigma-54 factor from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 525 a.a., RNA polymerase sigma54 factor from Azospirillum brasilense Sp245

 Score =  218 bits (555), Expect = 4e-61
 Identities = 171/535 (31%), Positives = 257/535 (48%), Gaps = 79/535 (14%)

Query: 2   QRLDLRQLLSQKLSPQQIQFIKLLQIPTAELEMRIKEELEINPALE-------------- 47
           QRLDLRQ  S  ++PQ  Q IKLLQ+   EL   +  E+E NP LE              
Sbjct: 5   QRLDLRQTQSLVMTPQLQQAIKLLQLSNIELSDFVDREIEQNPLLERDGGPGEGGGEPGG 64

Query: 48  --------------------------EGREEPAEEYSESDEYDSDEDYSKDEDLDLNDYL 81
                                     +GR     E + S+   S  D   D D + N Y 
Sbjct: 65  DGAGDGGGEPGAVDLAAPEERQPPMTDGRTRDTVEMTSSETMGSASDAPLDTDFE-NVYS 123

Query: 82  ND----------DEISGYKMQGDRGGDDEDK---EMPIAMTSTLTDALMDQLGFLNLDDK 128
           +D          D    ++ +G RGG ++D+   E  +    +L D L +QL     D  
Sbjct: 124 DDRFSDGTDGSSDVYGSWQERGGRGGFEDDESNLEATLTGQKSLRDHLTEQLKIDLPDLG 183

Query: 129 QYNIGMQLIGSIDHDGYIRR-DLSSIANDLAFSQNIETSEEEIEQVLHLIQSFDPAGIAA 187
              IG+ LI  +D  G+I   ++ S+A  L        + E +E+VL   Q FDP GI A
Sbjct: 184 DQLIGLALIDMLDEAGWITGLEVESLAGQLG------CAPERVERVLAACQRFDPPGIFA 237

Query: 188 RDLPECLLLQLERREQDQTTVLAERIIRESFDEFTKKHYSRIQSKFGISEEELKKAVDLI 247
           R L ECL +QL  RE+++     E ++ +  +    ++   +    G+  E++   V  I
Sbjct: 238 RSLKECLAIQL--REKNRFDPAMEALL-DHLELLAARNLPALMKVCGVDAEDVADMVAEI 294

Query: 248 VRLNPKPGGAGASMTRVQYIIPDFIL-TNNNGQLELSLNSRNAPDLRISRSYSDMFD--A 304
            +LNPKP       T  Q + PD ++  N  G   + LN    P + ++  Y       A
Sbjct: 295 RKLNPKPA-LSFDHTPAQLVTPDILMRANPGGGWLIDLNPDTLPRVLVNHRYFARISGTA 353

Query: 305 YDKSDKKDKKLKETVTFVKQKLDAAKWFIDAIRQRQNTLLRTMEAIIKYQHDFFLEGDES 364
            +K+DK+         ++ ++  +A W + ++ QR  T+L+    II+ Q  FF+ G  S
Sbjct: 354 RNKADKE---------YITERFQSANWLVKSLHQRATTILKVASEIIRQQDAFFIHG-VS 403

Query: 365 ELRPMILKDIAEEIGMDISTVSRVANSKAVQTEFGIYPLKYFFSEGIATDSGEDASSRE- 423
            L+P+IL+DIAE IGM  STVSRV  +K + T  G++ LKYFF+  I    G+ A S E 
Sbjct: 404 HLKPLILRDIAEAIGMHESTVSRVTTNKFMATPRGVFELKYFFTSAIQGADGQAAHSAEA 463

Query: 424 VKHILKEIIDNESKRKPLSDEKIEKLLNEKGYNIARRTVAKYREQLNIPVARLRK 478
           V++ +K +ID E     LSD+KI ++L  +G +IARRTVAKYRE + IP +  R+
Sbjct: 464 VRYRIKAMIDAEKPDDVLSDDKIVEILRGEGIDIARRTVAKYREAMRIPSSVQRR 518