Pairwise Alignments

Query, 480 a.a., RNA polymerase sigma-54 factor from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 503 a.a., RNA polymerase factor sigma-54 from Ralstonia sp. UNC404CL21Col

 Score =  252 bits (643), Expect = 2e-71
 Identities = 167/521 (32%), Positives = 259/521 (49%), Gaps = 62/521 (11%)

Query: 2   QRLDLRQLLSQKLSPQQIQFIKLLQIPTAELEMRIKEELEINPALEEGRE---------- 51
           Q L LR      L+PQ  Q I+LLQ+ T EL+  +++ L  NP LE   E          
Sbjct: 3   QSLQLRLSQHLALTPQLQQSIRLLQLSTIELQQEVEQALTENPLLERENEWLDTSARIGA 62

Query: 52  --------------------EPAEEYSESDE---------YDSDEDYSKDEDLDLNDYLN 82
                                PA    ++ +         +DS  D+  D   D +D+  
Sbjct: 63  DGSVSALQSNSATPLPTESPSPAPNGGDNSDSADNSYENGHDSGADFDSDYGSDRSDWSL 122

Query: 83  DDEISGYKMQGDRGGDDEDKEMPIAMTS---TLTDALMDQLGFLNLDDKQYNIGMQLIGS 139
           DD          +   DED   P+ +     +L + LM+QL  L L  +   + + LI S
Sbjct: 123 DDFAR-------KPQSDEDDRAPLQLREAEQSLREFLMEQLAPLKLSMRDKGLVIFLIES 175

Query: 140 IDHDGYIRRDLSSIANDLAFSQNIETSEEEIEQVLHLIQSFDPAGIAARDLPECLLLQLE 199
           +D +GY+   L  I  DL     +E   +E++  L ++QSFDP GI AR   ECL LQL 
Sbjct: 176 LDDEGYLSGTLDEILADLPAELEVEL--DELQAALRMLQSFDPPGIGARSAAECLSLQLH 233

Query: 200 RREQDQTTVLAERIIRESFDEFTKKHYSRIQSKFGISEEELKKAVDLIVRLNPKPGGAGA 259
           R +      LA  I+ +  +    + Y+R++    + E  LK A +LI  L P PG A  
Sbjct: 234 RLDSP-AKALALIIVNQHLELLAARDYTRLKKALSVDEPALKAAHELIRSLAPFPGHA-F 291

Query: 260 SMTRVQYIIPDFILTNNNGQLELSLNSRNAPDLRISRSYSDMFDAYDKSDKKDKKLKETV 319
                 +++PD ++   +      LN    P LRI+  Y+ +         +  + +   
Sbjct: 292 GRAEADFVVPDVVVRKTSAGWMAQLNPDVMPRLRINDMYAQIL--------RSSRGESGA 343

Query: 320 TFVKQKLDAAKWFIDAIRQRQNTLLRTMEAIIKYQHDFFLEGDESELRPMILKDIAEEIG 379
             ++QKL  A+W I  I+QR +T+LR  +AI++ Q  FF  G E  +RP++L++IA+ +G
Sbjct: 344 ANLQQKLQEARWLIKNIQQRFDTILRVSQAIVERQKSFFTHG-EIAMRPLVLREIADTLG 402

Query: 380 MDISTVSRVANSKAVQTEFGIYPLKYFFSEGIATDSGEDASSREVKHILKEIIDNESKRK 439
           +  ST+SRV  +K + T  G + LKYFF   ++T++G  ASS  ++ ++K+++  E  + 
Sbjct: 403 LHESTISRVTTNKYMATPMGTFELKYFFGSHVSTETGGAASSTAIRALIKQLVGAEDPKN 462

Query: 440 PLSDEKIEKLLNEKGYNIARRTVAKYREQLNIPVARLRKEL 480
           PLSD +I +LL E+G+ +ARRTVAKYRE L IP   LRK L
Sbjct: 463 PLSDSRIAELLGEQGFVVARRTVAKYREALKIPAVNLRKSL 503