Pairwise Alignments

Query, 480 a.a., RNA polymerase sigma-54 factor from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 493 a.a., RNA polymerase sigma54 factor from Burkholderia phytofirmans PsJN

 Score =  244 bits (624), Expect = 4e-69
 Identities = 164/513 (31%), Positives = 261/513 (50%), Gaps = 53/513 (10%)

Query: 1   MQRLDLRQLLSQKLSPQQIQFIKLLQIPTAELEMRIKEELEINPALE------------- 47
           M  ++LR   S  L+P+  Q ++LLQ+ + E +  ++  L+ NP LE             
Sbjct: 1   MPSIELRTRQSLALTPRLQQSVRLLQLSSLEFQQELRTALDTNPFLEYDSSETEDVALAT 60

Query: 48  -----EGREEPAEEYSESDEYDSDEDYSKDEDLDLNDYLNDDEISGYKMQGDRGGD---- 98
                +G   PA +   S E DS    S + D  L    +DD      M GD  GD    
Sbjct: 61  ATSGEDGGALPATDTVASAEPDSLPVESGNNDT-LESAGHDD------MPGDFSGDYSSR 113

Query: 99  -------DEDKEMPIAMTS---TLTDALMDQLGFLNLDDKQYNIGMQLIGSIDHDGYIRR 148
                  D D   P        TL + L D L    LDD+   +   +I ++D DGY+R+
Sbjct: 114 SSTRQNGDSDSSDPAEWARSQPTLREQLHDSLRLYRLDDRDRAVARFIIEALDDDGYLRQ 173

Query: 149 DLSSIANDLAFSQNIETSEEEIEQVLHLIQSFDPAGIAARDLPECLLLQLERREQDQT-T 207
           +LS +A+ +      E +EEE+   L L+QS D  G+ AR L ECLLLQ+     D    
Sbjct: 174 ELSDLADSVDLEP--ELTEEELLVALRLVQSLDRPGLGARSLSECLLLQVNALPADTPGR 231

Query: 208 VLAERIIRESFDEFTKKHYSRIQSKFGISEEELKKAVDLIVRLNPKPGGAGASMTRVQYI 267
            +A +++    +   ++  + +Q + G S EEL+ A  L+ +L+PKPG +    T   Y+
Sbjct: 232 DVARQVVEHHLERLARREQAELQKQIGCSAEELRVACALVRKLDPKPGNS-YGRTEDNYV 290

Query: 268 IPDFILTNNNGQLELSLNSRNAPDLRISRSYSDMFDAYDKSDKKDKKLKETVTFVKQKLD 327
           +PD I+     +  +++N    P  RI R Y+++F     + +           + Q+L 
Sbjct: 291 VPDVIVRQVRNKWVVTINPAVQPRARIHRMYAELFAQSAGASRSP---------LAQQLQ 341

Query: 328 AAKWFIDAIRQRQNTLLRTMEAIIKYQHDFFLEGDESELRPMILKDIAEEIGMDISTVSR 387
            A+W I   +QR +T+ R  E I+ +Q  FF  G E  L+PM+L+D+A+E+G+  ST+SR
Sbjct: 342 EARWLIRNAQQRFDTIQRVAECIVAHQKAFFQYG-EIALKPMVLRDVADELGLHESTISR 400

Query: 388 VANSKAVQTEFGIYPLKYFFSEGIATDSGEDASSREVKHILKEIIDNESKRKPLSDEKIE 447
              +K + T  GI+  K+FF   + T+SG   S+  V+ +LKE+I  E+   PLSD  + 
Sbjct: 401 ATGNKYMATPRGIFEFKHFFPRELGTESGGTCSAAAVRALLKEMIAAENTHDPLSDVTLA 460

Query: 448 KLLNEKGYNIARRTVAKYREQLNIPVARLRKEL 480
           K+L ++G  +ARRTVAKYR  + +P A LR+++
Sbjct: 461 KMLADQGVLVARRTVAKYRHLMKVPPAELRRQI 493