Pairwise Alignments

Query, 568 a.a., single-stranded-DNA-specific exonuclease RecJ from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 574 a.a., single-stranded-DNA-specific exonuclease RecJ (RefSeq) from Shewanella amazonensis SB2B

 Score =  253 bits (647), Expect = 1e-71
 Identities = 179/560 (31%), Positives = 292/560 (52%), Gaps = 29/560 (5%)

Query: 29  LASILCQRGICTFDEAKHFFRPSLQDLHDPFLMKDMDQAVNRLNNALHSNEKILVYGDYD 88
           +  +L +RG+   D  +   R     L  P  M  +D+A   L +A  +++++L+ GD+D
Sbjct: 24  IKQLLARRGVAGDDCEQELSR-----LLRPETMLGLDRAACLLADAAMASKRMLIVGDFD 78

Query: 89  VDGTTSVALMYGFLRNY-TSNIDFYIPDRYKEGYGVSSQGIDWAAENGFTLIISLDCGIK 147
            DG TS ++    L+       DF IP+R+  GYG+S   +  A E G  ++I++D GI 
Sbjct: 79  ADGATSTSVCLLALKMLGIHGADFLIPNRFDYGYGLSVPLVALAVEKGAEVLITVDNGIS 138

Query: 148 SADKVAYASEKGIDFIICDHHLPDEDIPQAVAVLDPKRVDCPYPYKELSGCGVGFKLLQA 207
           S + VA A   G+  +I DHHLP + +P A A+++P +  C +  K ++G GV F L+ A
Sbjct: 139 SIEGVAAAKAAGMQVVITDHHLPGQVLPDADAIVNPNQQGCTFASKSIAGVGVAFYLMLA 198

Query: 208 FCIQ---------NNIEQEEAYKLLDLLVVSIAADIVPITGENRILAYFGLQHLNGPQPM 258
              +           I++     L+D++ +   AD+V +   NRIL   GL+ +   +  
Sbjct: 199 LRAELRRRGWFEKLGIKEPNLAVLVDIVALGTVADVVSLDANNRILVDAGLKRVRAGR-C 257

Query: 259 RPGLDALKELADIRSEMDITSIVFGFA--PRINAAGRMGDAKNSVRMLLAQTKEEAFKMA 316
           RPG+ AL E+A  R+     +  FGFA  PR+NAAGR+ +    V  LL      A +MA
Sbjct: 258 RPGITALLEVAK-RNPARAVAADFGFAVGPRLNAAGRLDEMSLGVETLLCDDIMYARRMA 316

Query: 317 DIINESNKERRSKDTNITKEALQMIE--QDEFLRTANSTVLFKETWHKGVIGIVASRCIE 374
             ++  N+ERR  +T +  EAL+ +E  Q E  +      L+++ WH+GVIGI+ASR  +
Sbjct: 317 AELDGLNQERRELETGMQAEALKSLERLQLEESQLPWGIALYQDDWHQGVIGILASRIKD 376

Query: 375 HYYRPTIILTQ-SNGKASGSARSVHGFNVHSAIESCSD----LLEQFGGHMYAAGLTLPV 429
            Y+RP I   + S+ +  GSARS+ G ++   +E  S     L+ +FGGH  AAGL+L  
Sbjct: 377 KYHRPVIAFAEASDNEVKGSARSIKGLHMRDLLELISSRHPGLIPKFGGHAMAAGLSLAK 436

Query: 430 ENVPAFIERFERVVTDTITEEQKIPQIEIDAPINLKQITRNFYNIIRQMEPFGPGNMRPV 489
            +V  F   F+  V + ++ E    +I  D  + ++ +T    N+IR   P+G G   P+
Sbjct: 437 ADVSKFQTVFDDTVRELLSPELLTGEILSDGELPIEYLTLETANLIRASGPWGQGFEEPL 496

Query: 490 FVSECVYDTGSVRVVGDSHLKLRL-TQDGFTSIDAIGFGLGDYYKAISKGIPFDVCYTVE 548
           F     +     R+VG+ HLK+ + T+ G   +DAI F +       +      + Y ++
Sbjct: 497 FDGH--FRLLQQRLVGEKHLKMMVETECGRLMLDAIAFNVDLKLWPDATVRHVHLAYRLD 554

Query: 549 ENIYRGVITLQLRIKDIRIK 568
            N +RG  +LQL ++ I  K
Sbjct: 555 VNEFRGNQSLQLLVEQIDAK 574