Pairwise Alignments

Query, 568 a.a., single-stranded-DNA-specific exonuclease RecJ from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 580 a.a., single-stranded-DNA-specific exonuclease RecJ from Phaeobacter inhibens DSM 17395

 Score =  237 bits (604), Expect = 1e-66
 Identities = 183/577 (31%), Positives = 279/577 (48%), Gaps = 28/577 (4%)

Query: 3   KRWVISQEAPVEVVQQLAEQLKISSTLASILCQRGICTFDEAKHFFRPSLQDL-HDPFLM 61
           +RW+          + + +Q  + + +  +L +RG+ +  EA  F  P L++L  DP  M
Sbjct: 13  RRWIGPDVEVARAAEMMEQQTALPAAVCQVLARRGVPSH-EASGFLTPQLKELLPDPRRM 71

Query: 62  KDMDQAVNRLNNALHSNEKILVYGDYDVDGTTSVALMYGFLRNYTSNIDFYIPDRYKEGY 121
           KDM+ A  R   A+   E+I V+ DYDVDG +S AL+  +L     +   Y+PDR  EGY
Sbjct: 72  KDMEPAAARFLQAVERCERIAVFADYDVDGGSSAALLLVWLNQVGLSATLYVPDRIDEGY 131

Query: 122 GVSSQGIDWAAENGFTLIISLDCGIKSADKVAYASEKGIDFIICDHHLPDEDIPQAVAVL 181
           G +   +  A      LI+ +DCG  S   +A A  KG D I+ DHHL  E +P  VAV+
Sbjct: 132 GPNDAAMA-ALAREHDLIVCVDCGTLSHGPIAAA--KGADVIVLDHHLGGETLPDCVAVV 188

Query: 182 DPKRVDCPYPYKELSGCGVGFKLLQAFCIQNNIE----QEEAYKLLDLLVVSIAADIVPI 237
           +P R D           GV F +L     Q   +      +   LLDL+ ++  AD+ P+
Sbjct: 189 NPNRQDEDGDLGYFCAAGVVFLMLVELRRQMRDKGLGTGPDLMALLDLVALATVADVAPL 248

Query: 238 TGENRILAYFGLQHLNGPQPMRPGLDALKELADIRSEMDITSIVFGFAPRINAAGRMGDA 297
              NR L   GL+ +   Q  RPGL AL +++ + S      + F   PR+NA GR+G A
Sbjct: 249 IEANRALVRQGLKVMATRQ--RPGLVALADVSRMDSAPSTYHLGFLLGPRVNAGGRIGKA 306

Query: 298 KNSVRMLLAQTKEEAFKMADIINESNKERRSKDTNITKEALQMIEQDEFLRTANSTVLFK 357
               R+L      EA  +A  ++E N ERR  +  +   AL+  E     R  ++ +++ 
Sbjct: 307 DLGARLLATSDPAEAEAIAARLDELNTERRDIENAVRAAALEQAE----ARGLDAPLVWA 362

Query: 358 --ETWHKGVIGIVASRCIEHYYRPTIILTQSNGKASGSARSVHGFNVHSAIE--SCSDLL 413
             E WH GV+GIVASR  E   RP I++     +  GS RSV G ++ ++I+  +   LL
Sbjct: 363 AGEGWHPGVVGIVASRLKEAAGRPAIVIGLDGDEGKGSGRSVSGIDLGASIQRAAAEGLL 422

Query: 414 EQFGGHMYAAGLTLPVENVPAFIERFERVVTDTITEEQKIPQIEIDAPINLKQITRNFYN 473
            + GGH  AAGLT+  + +   + R   ++      +     +++D  +     T     
Sbjct: 423 IKGGGHKMAAGLTVARDQLEPAMARLSELLAKQGAGDLGPSDLKLDGMLMPGAATVPLIE 482

Query: 474 IIRQMEPFGPGNMRPVFVSECVYDTGSVRVVGDSHLKLRLTQDGFTSIDAIGFGLGDYYK 533
            I Q  PFG G   P +    +    + R VG+SHLKL L+    + IDAI FG  D   
Sbjct: 483 QIEQAGPFGAGAPAPRYGFPDLQVRFAKR-VGESHLKLSLSDGLSSGIDAICFGAFD--T 539

Query: 534 AISK------GIPFDVCYTVEENIYRGVITLQLRIKD 564
           A+        G  F     +E N + G  ++QLR++D
Sbjct: 540 ALGSRLLDHGGARFHFAGRLEINTWGGRQSVQLRLED 576