Pairwise Alignments

Query, 568 a.a., single-stranded-DNA-specific exonuclease RecJ from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 565 a.a., single-stranded-DNA-specific exonuclease RecJ from Dechlorosoma suillum PS

 Score =  248 bits (632), Expect = 6e-70
 Identities = 180/575 (31%), Positives = 290/575 (50%), Gaps = 35/575 (6%)

Query: 6   VISQEAPVEVVQQLAEQLKISSTLASILCQRGICTFDEAKHFFRPSLQDLHDPFLMKDMD 65
           +I++  P     QL EQ  +   LA I   RGI    E  +     L+ L  P  +   +
Sbjct: 4   LIARPVPPRPQWQL-EQEGLHPLLARIYAARGIKHKAELDY----DLKSLIPPSQLTGTE 58

Query: 66  QAVNRLNNALHSNEKILVYGDYDVDGTTSVALMYGFLRNYTSNIDFYIPDRYKEGYGVSS 125
           +A   L +A+ +  +ILV GDYD DG T+ A+    LR     +D+ +PDR+  GYG+S 
Sbjct: 59  EAAILLADAIEAEARILVVGDYDCDGATATAVAVRALRLLGGTVDYLVPDRFVHGYGLSP 118

Query: 126 QGIDWAAENGFTLIISLDCGIKSADKVAYASEKGIDFIICDHHLPDEDIPQAVAVLDPKR 185
           Q ++ AAE    L++++D GI S + V  A + GI  +I DHHLP E +P+A  +++P +
Sbjct: 119 QIVELAAERQPDLLVTVDNGIASIEGVEAARQLGIATLITDHHLPAETLPEADCIVNPNQ 178

Query: 186 VDCPYPYKELSGCGVGFKLLQAFCIQNNIEQEEAYK----------LLDLLVVSIAADIV 235
             C +P K L+G GV F +  A  ++  + +  A+           LLDL+ +   AD+V
Sbjct: 179 PGCTFPSKALAGVGVMFYV--ALALRAEMRRRGAFGPERPEPNFSCLLDLVALGTVADVV 236

Query: 236 PITGENRILAYFGLQHLNGPQPMRPGLDALKELADIRSEMDITSIVFGF--APRINAAGR 293
            +   NRIL   GL+ +   + + PG+ AL   A  R+    ++   GF   PR+NAAGR
Sbjct: 237 KLDHNNRILVAQGLKRMREGK-LTPGIRALFRAAG-RNLQTASAFDLGFTVGPRLNAAGR 294

Query: 294 MGDAKNSVRMLLAQTKEEAFKMADIINESNKERRSKDTNITKEALQMIEQDEFLRTANST 353
           + D    +  L+   +  A  +A  +++ N+ERR  +  + ++AL  +E  +   +    
Sbjct: 295 LSDMSLGIECLITDDEARAANIAQQLDQLNRERREIEAGMQEQALIHLENFDLEASGAGV 354

Query: 354 VLFKETWHKGVIGIVASRCIEHYYRPTIILTQ-SNGKASGSARSVHGFNVHSAIESCS-- 410
            LF   WH+GV+GI+ASR  E  +RP     +  +G+  GS RS+ G ++  A++  S  
Sbjct: 355 ALFDPDWHQGVVGILASRIKEKLHRPVFAFARGDDGQIKGSGRSIPGLHLRDALDLVSKR 414

Query: 411 --DLLEQFGGHMYAAGLTLPVENVPAFIERFERVVTDTITEEQKIPQIEIDAPINLKQIT 468
              +L +FGGH  AAG TL  E    F   F +V  + +        +E D  +    I+
Sbjct: 415 APGILLRFGGHAMAAGATLMEERFEEFKSLFAQVADELLNPADLTRTLETDGALEAGYIS 474

Query: 469 RNFYNIIRQMEPFGPGNMRPVFVSECVYDTGSVRVVGDSHLKLRLTQDGFTSIDAIGFGL 528
                ++   E +G G   P+F  E V++  S RV+ D HLKLRL ++  + ++AI F  
Sbjct: 475 LQVAEMLAG-EVWGQGFPAPLF--EDVFEVESQRVLKDKHLKLRLKKER-SVLEAIQFNA 530

Query: 529 GDYYKAISKGIPFDVCYTVEENIYRGVITLQLRIK 563
            +     + G    + Y +  N Y GV T QL ++
Sbjct: 531 TE-----NPGPRARLAYRLTINDYNGVQTPQLVVE 560