Pairwise Alignments

Query, 568 a.a., single-stranded-DNA-specific exonuclease RecJ from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 571 a.a., single-stranded-DNA-specific exonuclease RecJ (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  308 bits (788), Expect = 5e-88
 Identities = 193/578 (33%), Positives = 310/578 (53%), Gaps = 25/578 (4%)

Query: 1   MEKRWVISQEAPVEVVQQLA---EQLKISSTLASILCQRGICTFDEAKHFFRPSLQDLHD 57
           M + W+   E PV      A   E+L++S  +  +L +RG+ + D+   +  P+L+ L  
Sbjct: 1   MTRDWIFRPE-PVAASPPFAAWAERLEVSELIVRLLWRRGVGSVDDMALYLSPNLRHLAP 59

Query: 58  PFLMKDMDQAVNRLNNALHSNEKILVYGDYDVDGTTSVALMYGFLRNYTSNIDFYIPDRY 117
                 ++QA + L + L +     V+GDYDVDG TS AL+ G L  +      +IPDR 
Sbjct: 60  LAEWPGLEQAASTLADGLLAGLPFAVWGDYDVDGVTSTALVKGVLAQHGMAAAHHIPDRR 119

Query: 118 KEGYGVSSQGIDWAAENGFTLIISLDCGIKSADKVAYASEKGIDFIICDHHLPDEDIPQA 177
           +EGYG++   ++  AE G  L++++DCGI   + V  A E G+  ++ DHH+P E +P A
Sbjct: 120 EEGYGLNVAWVERLAEQGVRLLLTVDCGISDVEPVRRARELGMTVVVSDHHMPPEGLPDA 179

Query: 178 VAVLDPKRVDCPYPYKELSGCGVGFKLL---QAFCIQNNIEQEEAYKLLDLLVVSIAADI 234
            A+ +P+  +CP P   L+G GV F ++    A   +   ++ +    LDL+ +   AD+
Sbjct: 180 NAICNPRLAECPCP--ALAGVGVSFLVMAAVNAALAERTGKKADMRDFLDLVALGTLADV 237

Query: 235 VPITGENRILAYFGLQHLNGPQPMRPGLDALKELADIRSEMDITS--IVFGFAPRINAAG 292
           V + G+NRIL   GL  L   +  RPG+ ALK ++       I +  +VFG APRINAAG
Sbjct: 238 VNLHGQNRILVKNGL--LKIAEARRPGMAALKTVSGYNPTAAIGAGQVVFGLAPRINAAG 295

Query: 293 RMGDAKNSVRMLLAQTKEEAFKMADIINESNKERRSKDTNITKEALQMIEQDEFLRTANS 352
           RMG A+ ++++LL     EA ++A  ++  N  RR+++  I   A    +Q E       
Sbjct: 296 RMGKAELALQLLLTDDHAEAARLAQELDAENARRRAEEDRILDAAK---KQAEGQLDRMG 352

Query: 353 TVLFKETWHKGVIGIVASRCIEHYYRPTIILTQSNGKASGSARSVHGFNVHSAIESCSDL 412
            VL  + WH GVIGIVASR ++ +YRPT+IL+       GS RSV  F++H+ +  C+DL
Sbjct: 353 LVLHGDDWHPGVIGIVASRIVDEFYRPTLILSSDGQSMKGSGRSVAEFDLHAGLTRCADL 412

Query: 413 LEQFGGHMYAAGLTLPVENVPAFIERFERVVTDTITEEQKIPQIEIDAPINLKQITRNFY 472
              FGGH  AAG+++P  +V    ERF+ VV   + +    P++++D  +         +
Sbjct: 413 FTAFGGHHQAAGMSMPASHVDTLRERFDAVVRAELGDTPLTPRLKLDGELGF--ALAGDF 470

Query: 473 NIIRQME---PFGPGNMRPVFVSECVYDTGSVRVVGDS--HLKLRLTQDGF-TSIDAIGF 526
            +++++E   PFG GN  PVF S  V     +R  G +  H++L+LT +    ++ A  +
Sbjct: 471 TLLKELEMLQPFGTGNAEPVFASPPVL-VRDLRRFGPTRDHVELQLTDESCGITLRAKAW 529

Query: 527 GLGDYYKAISKGIPFDVCYTVEENIYRGVITLQLRIKD 564
                +    +G    + YT   + Y G  ++ LRIKD
Sbjct: 530 RQSGQFPDSLRGTRVRLAYTPRIDRYNGAASVDLRIKD 567