Pairwise Alignments

Query, 760 a.a., ribonuclease R from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 876 a.a., exoribonuclease R from Pseudomonas fluorescens FW300-N2E3

 Score =  361 bits (927), Expect = e-104
 Identities = 230/754 (30%), Positives = 373/754 (49%), Gaps = 52/754 (6%)

Query: 40  ESAREASARKEPSNRKGAPKSAKAVVLEVFSNSPDAVFTMRQVTRRLGVTDKAGREQVQN 99
           E+AREA   + P         ++ ++L+  ++         Q+    G+T +   E ++ 
Sbjct: 10  EAAREAEKYENPI-------PSRELILQHLADRGSPA-NREQLVEEFGLTTEDQIEALRR 61

Query: 100 LVKALVRENKLLPVDDDKYMMNLKVDIITGRVDLANSKYAYIVSEEREEDVRVHTEHLQY 159
            ++A+ R+ +L+      Y    K+D+I GR+      + +++ ++  +D+ +    ++ 
Sbjct: 62  RLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLIPDDGSDDLFMSPAQMRL 121

Query: 160 AMDGDLVKVEVLPSVRGGRQEGVVVEVLQRSRSEMVGLMELSKNFGFVVPDFKRTYFDVF 219
             DGD     V    R GR+EGV+VEV+ R+   +VG        GFVV D  +   +V 
Sbjct: 122 VFDGDRALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVADNPKIQQEVL 181

Query: 220 VGERHLNDAQSGDKVLVRIIEWPDKPGKNPTGEVIRVFGPAGEHEAEIHSIMAEFGLPFE 279
           V      +A  G  V V+I  WP  P   P G+V+ V G       EI   +  + +P  
Sbjct: 182 VTPGRNANANIGQFVEVKITHWPT-PRFQPQGDVVEVVGNYMAPGMEIDIALRTYDIPHV 240

Query: 280 FPESVEEEAESISDKIPAGEIAKRRDFRDVTTFTIDPADAKDFDDALSIQ------KLEN 333
           +PE+V +EA  +  ++   +  KR D R +   TID  DA+DFDDA+  +      +L +
Sbjct: 241 WPEAVLKEAAKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS 300

Query: 334 GNWEIGVHIADVTHYVTPRSILEKEAFHRATSVYLVDRTIPMLPERLSNGLCSLRPNEEK 393
           G W++ V IADV+ YV   S L+ E+  R  SVY  +R +PMLPE+LSNGLCSL P+ ++
Sbjct: 301 GGWKLYVAIADVSSYVKIGSALDAESQVRGNSVYFPERVVPMLPEQLSNGLCSLNPHVDR 360

Query: 394 LTFSVVFELDENGKLYDTWYGRTIIYSDRRFAYEEAQERIET----------GE-GDFAE 442
           L       + + G++ D  +   +I+S  R  Y +    +E           GE  D   
Sbjct: 361 LAMVCEMTISKTGEMTDYCFYEAVIHSHARLTYNKVSAMLEQPKTTEARQLRGEYTDVVP 420

Query: 443 EINLLNNIAKKLQAKRFKNGAISFETVEVKFKLDENGKPLSVYVKERKDAHKLIEEYMLL 502
            +  L ++ K L A R   GAI FET E +       K   +    R DAHKLIEE ML 
Sbjct: 421 HLKQLYSLYKVLLAARHVRGAIDFETQETRIIFGSERKIAEIRPTVRNDAHKLIEECMLA 480

Query: 503 ANKKVAEFVYNLSKGKKRPTMVYRTHGSPDPDRLSTFALFARKFGYKVDP--EGDISEEL 560
           AN   AEF+      K     +YR H  P P+RL     F  + G  +    +G   ++ 
Sbjct: 481 ANVATAEFLK-----KHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPSPKDY 535

Query: 561 NHLTKEIEGKPEQSVLQNLAIRTMAKAKYSTEPEGHFGLAFAHYSHFTSPIRRYPDMMAH 620
             L   I+ +P+  ++Q + +R++++A YS + +GHFGL +  Y+HFTSPIRRYPD++ H
Sbjct: 536 QALLAGIKDRPDFHLIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTH 595

Query: 621 RLLQHYLDGGKSA-------------------DQEEYEERCRHSSEMEKRAADAERASIK 661
           R ++  +   +                     D+   E+     S  E+RA +A R  + 
Sbjct: 596 RAIRSVIHSKQDTPHVRRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVN 655

Query: 662 YKQVEFMKDTIGNQYKGIVSGVTEWGIFVEIEENKCEGMVRLADINDDYYELDADNYRII 721
           + + EFMKD +G  + G+++ VT +G+FVE+ +   EG+V +  +  DYY  D  ++R+ 
Sbjct: 656 WLKCEFMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLA 715

Query: 722 GRQTKRIISFGDEVLVEVKSANMADRTIDLDLIE 755
           G +T R    GD V V V   ++ +R ID ++ E
Sbjct: 716 GERTGRSFRLGDTVEVRVMRVDLDERKIDFEMAE 749