Pairwise Alignments

Query, 459 a.a., DNA repair protein RadA from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 499 a.a., DNA repair protein RadA from Bifidobacterium breve UCC2003

 Score =  323 bits (828), Expect = 8e-93
 Identities = 186/496 (37%), Positives = 268/496 (54%), Gaps = 48/496 (9%)

Query: 1   MAKIKTSYFCQNCGAQSAKWIGKCPACGEWNTYVEEVVQREEVTPTTAWKVGTSSAQVSN 60
           MAK    Y C  CG    KW G+CP CG+W T  E    R      TA    TS  + + 
Sbjct: 1   MAKSSVQYVCSECGWNGPKWYGRCPECGQWGTVEEFHEARPAAGSHTAAPGRTSRTRSAA 60

Query: 61  KP-------KPIADISYQEQQRIVTQDQELNRVLGGGIVPGSMVLIGGEPGIGKSTLMLQ 113
            P       KPI +I  +  +R+ T   E +RVLGGG+VPGS+ LI GEPGIGKSTL+LQ
Sbjct: 61  VPDTARAAAKPITEIGTETVERLGTGFSEFDRVLGGGVVPGSVTLIAGEPGIGKSTLLLQ 120

Query: 114 IA----------------------------LSLRGLKVLYVSGEESEQQIKMRAERLLAQ 145
            A                             S R   VLY+SGEES+ Q+++RA R+ A 
Sbjct: 121 TAGNIARTVAEGQTINAAGRGQSSHRPSGLASTRAHTVLYISGEESQAQVRLRATRINAV 180

Query: 146 TSDCFILTETGTQNIFKQVEQIRPQVLIIDSIQTLHSSFIEAGAGSVSQVRECTAELLKF 205
             +  +   T    +   +EQ +P + I+DS QT+ S  ++  +G  +QVRE  + L+  
Sbjct: 181 EPNLLLAATTDLATVLGLIEQNKPALAIVDSAQTIVSQEVDGISGGSTQVREVASALIDT 240

Query: 206 AKESGTPVFLIGHITKEGNLAGPKILEHMVDTVLQFEGDRHMTYRILRTTKNRFGSTSEL 265
           AK    PVFL+GH+TK+G++AGP+ LEH+VD V QFEGD     R+LR  KNRFG T E+
Sbjct: 241 AKTLDIPVFLVGHVTKDGSIAGPRTLEHLVDVVCQFEGDSETALRMLRAAKNRFGPTDEV 300

Query: 266 GIYEMMGSGLREVSNPSEILI------SQREDAFSGISIGATLEGNRPLLIEVQSLVSPA 319
           G ++M G G+ EV++P+ + +      S  +    G  +  TL+G+R L IEVQ+LV+ +
Sbjct: 301 GCFDMSGEGIEEVTDPAGLFLSGDGPESANDAPVEGTCVTFTLDGHRSLPIEVQALVTNS 360

Query: 320 TYGTPQRTSTGFDAKRLNMLLAVLEKRGGYRLGAQDVFLNIAGGLKVEDPALDLAVCASI 379
              TP+R   G D  R+ ML+AVL +     L + D++++   G + ++P  DLA+  ++
Sbjct: 361 VLPTPRRAVNGVDPSRIAMLVAVLYRHSKLNLLSNDLYISTIAGGQAKEPGSDLAIVGAL 420

Query: 380 LSSFEDMPISNTACFAAEVGLGGEVRAVNRVENRITEAEKLGFTDIYISKYNK------- 432
            S+    PI+ + C   E+ L G+VR V R+E R+ EA +LGFT   I    K       
Sbjct: 421 ASAATSKPIARSTCAIGEISLTGQVRPVPRMEYRLREAARLGFTTAVIPPLRKPVHVDGL 480

Query: 433 KGVDLSKFSINVHAYG 448
           K V+ S  +  +HA G
Sbjct: 481 KLVEASTLADALHALG 496