Pairwise Alignments

Query, 445 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 580 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 53.5 bits (127), Expect = 2e-11
 Identities = 43/147 (29%), Positives = 61/147 (41%), Gaps = 18/147 (12%)

Query: 306 TPGDDRLSKVSERARAATQRGLSGDYDVFVYKNNTAPVPIIRNEELILIYAEANIQTGDL 365
           T  D  ++      R      ++G  D     N  A     R  +++L+YAEA+++ GD 
Sbjct: 386 TSSDSDVTNTGYYTRKTIDESVNGA-DNLQMSNGMANYIFFRYADVLLMYAEASLEAGDK 444

Query: 366 EEAARALDIIRTRHGLEP-----YAGPVTEEALIDELLYQRRYSLFFEGHRWIDVRRYDR 420
             A   LD++RTR    P     Y   +TE  L + +   RR  L FE  RW D+ R+  
Sbjct: 445 PTAIEYLDMVRTRGDNMPSIGDTYPQGITENQLREIIRRDRRIELAFEDKRWWDILRWKI 504

Query: 421 LD------ELPI------DREEDDVWE 435
            D        PI      D   D VWE
Sbjct: 505 CDGENGVMNKPIGGMKIEDTNGDGVWE 531