Pairwise Alignments

Query, 445 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 493 a.a., Outer membrane binding protein for vancomycin (SusD-like) (from data) from Bacteroides thetaiotaomicron VPI-5482

 Score = 51.6 bits (122), Expect = 6e-11
 Identities = 90/357 (25%), Positives = 138/357 (38%), Gaps = 53/357 (14%)

Query: 111 WSGRYRVIKNLNVLIDILSDNTMVAAGKLTEEQRQGYLGYAKTIKAHQLLLNLTMTYTNG 170
           W   Y+ I N N  I I  D+         EE RQ   G A  ++A    L+L   Y   
Sbjct: 112 WYLIYKTIDNCNTAISIKGDS---------EELRQAQ-GQALALRAF-CYLHLVQHYQFT 160

Query: 171 IRVDVD--------DPDNLGPVLGRDEALAAIAGLLDEAAGHLEQAGDSFLFPLSSGFAG 222
              D D        +P   G    + +  + +A +  +    L  A D     +  G   
Sbjct: 161 YLKDKDAPCVPIYTEPTTSGT---KPKGKSTVAQVYQQIFDDLNLAQDYLTNYVRKGDGQ 217

Query: 223 FDTPDTFLQFNRALAARVSVYRGNWEEALTNLEASFFDLNGDFDTGVYYVFGT------- 275
              P+T +     L AR  +  G W EA    EA+    +    T  Y  F         
Sbjct: 218 KFKPNTDVV--NGLMARAYLLTGQWGEAAKAAEAARKGYSLMTTTAEYEGFNNISNKEWI 275

Query: 276 -GAGDQLNPL-----FYPQNA----AGEVRVAHPTFITDATPGDDRLSKVSERARAATQR 325
            G+   L+       FY  +A    A    +A P  +     GD RL           + 
Sbjct: 276 WGSPQTLSQSDASYNFYYLDATYVGAYSSFMADPHLMDTFVKGDIRLPLFQWM-----RE 330

Query: 326 GLSGDYDVFVYKNNTAPVPIIRNEELILIYAEANIQTG-DLEEAARALDIIRTRHGLEPY 384
           G  G     +  ++TA + ++R+ E+ LI AEA ++ G  L++A   L+ +RT  G+  Y
Sbjct: 331 GYLGYKKFHMRSDDTADLVLMRSAEMYLIEAEAKVRDGVALDQAVAPLNTLRTARGVGNY 390

Query: 385 -AGPVTEEALIDELLYQRRYSLFFEGHRWIDVRRYDRLDEL-----PIDREEDDVWE 435
                T+E +IDE+L +RR  L+ EG    DV R  +  E       + + E D W+
Sbjct: 391 DVTGKTKEQVIDEILMERRRELWGEGFGITDVLRNQKAVERMALSEDMQKTEVDCWQ 447