Pairwise Alignments

Query, 445 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 765 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 48.5 bits (114), Expect = 7e-10
 Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 5/92 (5%)

Query: 336 YKNNTAPVPIIRNEELILIYAEANIQTGDLEEAARALDIIRTRHGLEPYAG--PV---TE 390
           ++ + AP   IR  E++L YAEA       +EA  AL  IR R G     G  P      
Sbjct: 504 FRQSAAPYMEIRFAEVLLNYAEAACGANHFDEAVNALKRIRKRVGYTDNCGLDPAIFNDR 563

Query: 391 EALIDELLYQRRYSLFFEGHRWIDVRRYDRLD 422
             L + +LY+R+  L +EG R+ DVRR+   D
Sbjct: 564 AKLFEAILYERQIELAYEGKRFHDVRRWMLFD 595



 Score = 26.6 bits (57), Expect = 0.003
 Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 27/204 (13%)

Query: 1   MKKYSKIATYTLAMLVLCLAL-PACEIDDIPDP------NNTTIEDIRENTT--VGQLNN 51
           MKK +K  +  +A+L +  A+   C    + D       N TTI +  E+    +  L  
Sbjct: 11  MKKINKYGS--IALLTITAAIFTGCSDQFLEDKKLYGSFNGTTIYENYESADNRIAYLYY 68

Query: 52  LVVGAESGMRNALGTYYDAVSVIGREIYRFSASDPRFTTDLLGSGSNVLNNNTFYITNPW 111
           +++ + +G  +  G+  D  S    + Y          T+  G  S ++N N+       
Sbjct: 69  IMLPSATGGSDLTGSMGDMPSTGTSDQYSKC-------TEEYGGISGLMNPNSPLDYETV 121

Query: 112 SGRYRVIKNLNVLIDILSDNTMV----AAGKLTEEQRQGYLGYAKTIKAHQLLLNLTMTY 167
           +  + +  N +  + I   N M+     +  LTE Q+Q  LG A   +A +  L + M Y
Sbjct: 122 TDYFNLDNNYSPWVRIRECNDMIEGVIGSESLTERQKQLLLGQAFFFRAWRYYL-MVMMY 180

Query: 168 TNGIRVDVDDPDNLGPVLGRDEAL 191
             G+ + +D+  N  P++G  E +
Sbjct: 181 -GGVPI-IDNVQN--PIIGDSEGI 200