Pairwise Alignments

Query, 1740 a.a., PAS domain S-box protein from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 754 a.a., signal transduction histidine kinase from Phaeobacter inhibens DSM 17395

 Score =  292 bits (747), Expect = 1e-82
 Identities = 177/489 (36%), Positives = 277/489 (56%), Gaps = 11/489 (2%)

Query: 1121 EDGTLELISPSITQLLGYEEHEVLGQST-LLFYTNPEDQTRIRQLVAAEHTVRDIEVEMV 1179
            E G +  ++ + T++ GY   E +G+    L   +  D   +R L     T +   +E +
Sbjct: 262  EKGRISWVNEAFTRITGYRYDEAIGKMPGALLNGDDTDMAVVRALEKGRATGKPFRLE-I 320

Query: 1180 C---KDGTPKTIVLDAKLVYNEHGVPVAMEGVARDVSELKRTQIALLTAKEEAENLLKVK 1236
            C   KDG    +  +   +  + G    +  V RDV+  K+ +  L  A+  AE   +VK
Sbjct: 321  CNRRKDGQLLWLETNQVPMLRDDGTVETIIAVERDVTAAKQYEQQLKDARIAAEEGARVK 380

Query: 1237 TQFLANMSHELRTPMNGIIGMIDLLSQINTDPEQSEYIDTLRKSSDALLAILNDILDLSK 1296
            ++FLA MSHE+RTPMNG+IGM  +L +   D EQ  Y DT+  S+  LL+++ND+LDLSK
Sbjct: 381  SEFLATMSHEIRTPMNGVIGMAQMLERTQLDEEQKLYADTILGSARTLLSLINDVLDLSK 440

Query: 1297 IQAGKLVLHESGVDLHETLDKIHSLFVNRAQQKDLTFTYAIDPNVPRHVVTDETRLLQVL 1356
            + AG+++L E   DL     +   LF  +AQ+K +T    I P+VPR +  D+ RL QVL
Sbjct: 441  MDAGEVILSEVDFDLPACFQQTLQLFEPQAQEKGITLDLNIAPDVPRIINGDDRRLRQVL 500

Query: 1357 SNLTSNAIKFTNAGEVSIHVGAEQLDRKHFRLHVRVKDSGIGISPEGQELLFNDFTQLDN 1416
             NL  NA+KFT+ G V + V   ++  +  RL   V D+GIGI+ E Q+ +F  F+Q D 
Sbjct: 501  LNLVGNAVKFTDTGGVGVAVTTSRVGDR-LRLRFSVTDTGIGIAKEKQDQIFERFSQADA 559

Query: 1417 SSTKTFGGTGLGLAISRQLTHLLGGDIGVESIPGDGSVFWFNIKVRLASTLEVEQQQLRQ 1476
            + T+ FGGTGLGL ISR L   +GG+I V S PG GS F  +++++ A+   + +     
Sbjct: 560  AITRRFGGTGLGLTISRLLCEAMGGEIDVTSDPGKGSCFSVHLRMQPATGANLAEVAASA 619

Query: 1477 QQQLQEVESLTYTPYVLLVDDNQINQKVAQKQLERLGCITEIASNGYEAIERATTKKYNI 1536
            QQ  + +E +     +L+ +DN+IN+ + +K L+      E A +G EA+E+      ++
Sbjct: 620  QQAGRSLEGMR----ILVAEDNRINRLLVEKYLQDEPVTLEFAVDGAEALEKTPDFAPDV 675

Query: 1537 IFMDIQMPEMDGVTATKHIKEQLGSACPPIVAMTAYSMKDDAAKFMGQGMDDYVSKPVKS 1596
            I MD+ MP M+G+ AT++I+E +    P I A+TA +   D    +  GMDD++SKP+  
Sbjct: 676  ILMDMSMPVMNGLDATRNIRE-MDIRQPVIAALTANAFDSDREACLKAGMDDFLSKPINR 734

Query: 1597 SDLHAMISK 1605
             DL A++ K
Sbjct: 735  DDLLAVLRK 743



 Score = 33.9 bits (76), Expect = 8e-05
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 565 DKVNLIYYSLDKKGNIAFANNYFMKYVEYTEEEMIGQNFYELLVPKHDRAQRLQDFHKAM 624
           +  N   + +D+KG I++ N  F +   Y  +E IG+    LL         ++   K  
Sbjct: 251 ENANDSVFLMDEKGRISWVNEAFTRITGYRYDEAIGKMPGALLNGDDTDMAVVRALEKGR 310

Query: 625 ETKHLSSYYERDVVT--KSGQLKTIRWNCMFEYNQEGEVTGLTSVGKDMTDKRIAMEALK 682
            T      +  ++    K GQL  +  N +     +G V  + +V +D+T  +   + LK
Sbjct: 311 AT---GKPFRLEICNRRKDGQLLWLETNQVPMLRDDGTVETIIAVERDVTAAKQYEQQLK 367

Query: 683 DNKIRLQD 690
           D +I  ++
Sbjct: 368 DARIAAEE 375



 Score = 30.8 bits (68), Expect = 6e-04
 Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 9/146 (6%)

Query: 413 QLQKQLIRTEDKYKMLFESSYDAILLFKD-GIVVECNDKAIEFFRCTREDLIGKSPKDYS 471
           +LQ Q ++++ +  ++ E++ D++ L  + G +   N+          ++ IGK P    
Sbjct: 235 KLQAQQLQSQ-RLALVAENANDSVFLMDEKGRISWVNEAFTRITGYRYDEAIGKMPGALL 293

Query: 472 PEFQPDGQNSVEKTERLMRDLLTTGRSVTFEWKNRRKDGTLFDTEIT-VNRLILDGEY-Y 529
                +G ++     R +     TG+    E  NRRKDG L   E   V  L  DG    
Sbjct: 294 -----NGDDTDMAVVRALEKGRATGKPFRLEICNRRKDGQLLWLETNQVPMLRDDGTVET 348

Query: 530 VQAFKRDITQRKLAQQARRREEVLRE 555
           + A +RD+T  K  +Q  +   +  E
Sbjct: 349 IIAVERDVTAAKQYEQQLKDARIAAE 374