Pairwise Alignments

Query, 564 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 590 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  158 bits (400), Expect = 5e-43
 Identities = 178/628 (28%), Positives = 271/628 (43%), Gaps = 113/628 (17%)

Query: 4   LIALIALLPLLLGCTKLDVNPLSEGSSENWYSDETEITLALN-DLYRTYLWD-FEINYNT 61
           ++A +AL   L GC K D   L +GS     +D TE  L  N D  R +L + + +  + 
Sbjct: 9   ILAFVALA--LAGCKKSDF--LQDGSFSGG-NDITEAQLWANPDYARNFLNNVYAVLSDR 63

Query: 62  ERMSDNWT----QRQAIDAFPAGSV----NSEWS---RSEDLWLSTYKGITRANTILNSL 110
             + D         +A+++    S+    N  WS     +D++   Y GI +AN  L  +
Sbjct: 64  YNLGDGALLASGSDEAVNSNQNSSISTLNNGTWSPVRTFDDVYADMYVGIRKANMFLEKV 123

Query: 111 DNAT---------GKVAE-----AKIKQLAAEASLMRAVFYARLVFYYGDVPFYTGYLNI 156
           D +            VAE     A+I++L  +A  +RA F   L+  YG  P  T  L I
Sbjct: 124 DGSAIVPIDEVLPANVAENQTYAAQIERLKGQAYFLRAFFQFELLKRYGSFPIVTKTLTI 183

Query: 157 DDAFELGRTDKEVVLQQVYKDFDAAIESLPVS---YGSNELGRATKGAALAFKARAALY- 212
           +D  +L R   +  + Q+  D DAAI  LP+S   + +   GRA + +A+A KAR  LY 
Sbjct: 184 NDNLDLPRNTFDQCVAQISADCDAAIARLPISPADWNNVNRGRAAQTSAMALKARMLLYA 243

Query: 213 -------MGD---WVIARDAAKACMDLQVYSLHPNYGEYFLSKTRNSP---ETVFALPRS 259
                   GD   W  A DAAK  +D   + +   Y   +L    N+    E +FA    
Sbjct: 244 ASPQYNPTGDAAKWQAAADAAKRLIDTGKHGIFAAYQNIWLWNATNAAYNNEVIFATQTL 303

Query: 260 FELGSSWGAKNFYTRTPGGSAVAQPSWELFCAYPC-TDGLPI-DESPLFNPREPFKNRDP 317
               ++  + N      G +    P+ E+  A+   T G  I D +  +    P+ NRDP
Sbjct: 304 NT--NTIESSNAPVSYDGATGRTNPTQEMVDAFEMKTTGKAITDANSGYVATNPYANRDP 361

Query: 318 RCAMTIVEFGTEHLGVIYNPNPYATKVLNMETEKMVANKDTRSVDTYASYNGLALKKGVD 377
           R A  I+ F T  +  +   N +  K      E  V  KD  +++  A+  G  ++K + 
Sbjct: 362 RLAFAIM-FNTASVQPVVTANNFKGK----PVETFVGGKDGLNLNVNATKTGYYMRKYLS 416

Query: 378 ED--WSDNNETDFDIR----IMRYADVLLMYAEAQIELNEID-----ASVLDAINAVRAR 426
           E+  W+    T  ++R      RYA+VLL YAEA   LNE         +L ++NAVR R
Sbjct: 417 ENAVWTG---TATNVRRPWIFFRYAEVLLNYAEA---LNEAQGPAALTEILKSVNAVRQR 470

Query: 427 AYGVDVTNTTAYPALTAT----------SQEQLRKELRNERRIEFAWENRRFDDLLRWRL 476
                   +   PAL  T          ++E+LRK + NERR+E  +E +RF D+ RW+ 
Sbjct: 471 KNTATPAQSVDMPALQTTNPSAAGYVAPTKEELRKRIHNERRVELCFEEQRFYDVRRWKE 530

Query: 477 AEKALIRPIYGILDPNDLKQRVVDQNLWFYSQAPEIDENWLPDFSALHNAGTVKVLVERN 536
            E    +P+ G+        R+V      +S  P   EN              +V   +N
Sbjct: 531 GEITFNKPVTGM--------RIVQLTPTTFSYTPFTVEN--------------RVFTAKN 568

Query: 537 FDKERQYLFPIPSKEIIINKNLKQNPNY 564
                 YL+PI   E+     L QNP Y
Sbjct: 569 ------YLYPIAQNELNKAPGLGQNPGY 590