Pairwise Alignments

Query, 471 a.a., DNA repair nuclease with dnaQ and GIY-YIG domains (from data) from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 230 a.a., DNA polymerase III, epsilon subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 79.0 bits (193), Expect = 2e-19
 Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 11/171 (6%)

Query: 4   IVDIETTGGQPHQ-DKITEIA---IFIHDGEKIVDKYHTLINPERPIPYFITQLTGIKDD 59
           ++D ETTG +P + D++ EI    +F H     V  YH  INP+R +P    ++ G+ DD
Sbjct: 5   VLDTETTGFEPSEGDRLVEIGGVELFNHVPTGRV--YHQYINPQRSMPQSAFEVHGLGDD 62

Query: 60  MVLEAPKFYEVAKEIVEFTEGKVFVAHNVRFDYSFMKKEFADLGFTF--QRKTLCTVRLS 117
            + + P F EVA+  ++F      V HN  FD  F+  E   LG       + + T+ ++
Sbjct: 63  FLADKPLFAEVAEAFLDFIGDAKLVIHNAAFDMKFLNAELGWLGKPLLPMEQAIDTLAIA 122

Query: 118 RSLIPGLPSYSLGKLCN--SIDIPLSQRHRAIGDAEATALLFDKLIKINRP 166
           R   PG P+ SL  LC    +D    ++H A+ D+E  A ++ +LI   +P
Sbjct: 123 RRKFPGSPA-SLDALCRRFGVDNSAREKHGALLDSEILAEVYLELIGGQQP 172