Pairwise Alignments

Query, 232 a.a., tRNA pseudouridine(55) synthase from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 240 a.a., tRNA pseudouridine synthase B (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  222 bits (565), Expect = 6e-63
 Identities = 118/221 (53%), Positives = 148/221 (66%), Gaps = 10/221 (4%)

Query: 4   DFAAGEILLINKPLDWTSFDVVKKVR----NTIRVKK--VGHAGTLDPLASGLLILCTGK 57
           +F  GE+L  NKPL WTSF VV  VR      I VKK  VGHAGTLDPLA+G++ILCTGK
Sbjct: 2   NFKKGEVLFFNKPLGWTSFKVVGHVRYHICRRIGVKKLKVGHAGTLDPLATGVMILCTGK 61

Query: 58  FTKRIDEIQGQEKEYTGIIRLGEVTPSYDRETEVTETRDITHLTAEDIKAAAHTFVGAIE 117
            TKRI+E Q   KEY   +RLG  TPSYD E E+  T    H+T E ++     F+GAIE
Sbjct: 62  ATKRIEEFQYHTKEYVATLRLGATTPSYDLEHEIDATYPTGHITRELVEETLTHFLGAIE 121

Query: 118 QIPPIYSAVQIDGKRAYDLARKGKEVELKPRAVTIHAFEITSIN----GPEVAFKVVCSK 173
           Q+PP +SA  +DGKRAY+LARKG+EVELK + + I   E+         P +  +VVCSK
Sbjct: 122 QVPPAFSACMVDGKRAYELARKGEEVELKAKQLVIDEIELLECRLDDPEPTIRIRVVCSK 181

Query: 174 GTYIRSLAHDLGQKLGVGGHLSKLERTRIGEYKLEDALTIE 214
           GTYIR+LA D+G+ L  G HL++L RTR+G+ +LED L  E
Sbjct: 182 GTYIRALARDIGEALQSGAHLTELIRTRVGDVRLEDCLDPE 222