Pairwise Alignments

Query, 848 a.a., ATP-dependent helicase HrpB from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 826 a.a., RNA helicase, ATP-dependent DEAH box, HrpB type from Marinobacter adhaerens HP15

 Score =  726 bits (1874), Expect = 0.0
 Identities = 410/842 (48%), Positives = 544/842 (64%), Gaps = 26/842 (3%)

Query: 13  LPVKEALPRLLQVLNTSNRAVLEAPPGAGKTTLVPLALLEADWRGDGKILVLEPRRLATR 72
           LP+   LP L   L  +   +L+APPGAGKTT VP ALL+A WRGDGKIL+LEPRRLA R
Sbjct: 2   LPIDAILPDLKAALERTTTVLLQAPPGAGKTTRVPAALLDAPWRGDGKILMLEPRRLAAR 61

Query: 73  AAAERMADLLGEPVGQTVGYWVRMDHKVSRKTRVEVVTEGILTRIIQDDPALEGVAAIIF 132
           +AA  MA  L E  GQTVGY  R+D +VS  TR+EVVTEGILTR+IQ DP LE  AA+IF
Sbjct: 62  SAARFMARQLNEQPGQTVGYRTRLDTRVSAATRIEVVTEGILTRLIQADPMLEEYAAVIF 121

Query: 133 DEFHERNLQADLGLALALDAQAVLRPDLRLLVMSATLDATAIGQWL-QAPVVQSEGRLFP 191
           DEFHER+LQADLGLAL  ++Q  LR DLRLLVMSATLD   I Q L   PV+ SEGR FP
Sbjct: 122 DEFHERSLQADLGLALVRESQQALREDLRLLVMSATLDTGPIAQVLGDVPVITSEGRAFP 181

Query: 192 VQTHFLSPAEVAAAGNYPSQRLATLTPKAIRQALSQEAEGDLLVFLPGMGEIKKVAQQLE 251
           V  H+             S R+       +R+AL++++ G LLVFLPG+GEI++V QQL 
Sbjct: 182 VDVHYRPLPR--------SGRMVDQVTAVVREALAEQS-GSLLVFLPGVGEIRRVEQQLR 232

Query: 252 NTLGPAIELHLLHGDLPLSKQVAAIQPSPKGKRKVVLATSIAETSLTIEGVTIVVDGGFA 311
             L   + L  L+G+L   +Q  AI P+P+G+RKVVLAT+IAETSLTIEGV +V+D G  
Sbjct: 233 ANLPDRVMLAPLYGNLKSEQQDQAISPAPEGQRKVVLATAIAETSLTIEGVRVVIDCGQQ 292

Query: 312 RVPRFTPRTGLTTLATVPVSQAGADQRRGRAGRLGPGVCYRLWSTADQMQLPPRQSPEIL 371
           R   F P +G+T L T  VS+A A+QR+GRAGR+ PGVCYRLWS ++Q  L     PEIL
Sbjct: 293 RRAVFDPNSGMTRLVTGRVSRASAEQRKGRAGRMEPGVCYRLWSESEQFGLADYTPPEIL 352

Query: 372 DADLTGLVLELALWGVKDATTLNWLDSPPAAALALAKDLLQRLEALDAAGNPTPHGKALA 431
           +ADL  LVLELA WG ++A  + W+D PPAA    A  LLQ L+ LD+ G  T HGKA  
Sbjct: 353 EADLAPLVLELAQWGAREADAVAWIDKPPAAHWRQAVALLQWLDLLDSDGAITDHGKAAR 412

Query: 432 SLGIHPRLGHLVMRGHELGFGATACALAALLSERDVLKPLQLGWGEGIPDLQLRLELIAG 491
            LGIHPRL H+V++G  +G G  A A+AALL ERD+L P     G G  D+  R+ +  G
Sbjct: 413 ELGIHPRLAHMVLKGRSIGLGGAAAAVAALLEERDLLGP-----GTG-ADMHERVRVFFG 466

Query: 492 KSPVTPGFVVDENALRRVKEQAQNLR-QRLRDATGNLHPELAGLLTALAYPDRLAQR--E 548
           +        +D   L+ V++ A+ L      +AT     E+ G L ALAYPDR+A+R  +
Sbjct: 467 E---RRDRTLDVARLKAVRQSARRLSGPGATEATPPTETEI-GRLLALAYPDRIARRRSD 522

Query: 549 APGRVRLVSGQRASL-ATELFGEAEFYSIAHLD-LGKQPRILLAAPLAKSDLLEHFSEQV 606
              R +L +G+ A L   +     E+   A LD   ++  I LAAP+   DL    ++ +
Sbjct: 523 KAARYQLSNGKGAVLREDDPLARHEWLVAAELDGQAREATIYLAAPVDIPDLELDLADHI 582

Query: 607 EVLQEVRWHEGSQQVVARHLTRLGALLVEESTVSKPDADKVAAALLQALQEKGVERLPWS 666
           + ++E  W +   +++AR   +LG L++EE  + + D + V   LL A+++KG+E LPWS
Sbjct: 583 KEIEEALWDDSQGKILARRARKLGELVLEEKPLGRVDPELVRQGLLSAIRKKGLESLPWS 642

Query: 667 EEALRTRQRLAFLHRLEPEN-WPDTSDAALAASMDSWLAPHLHGLRTLDQVARLDFKEIL 725
           + + + R RL  L R  P++ WPDT DAAL  +++ WL P L G+     +AR+D    L
Sbjct: 643 DGSRQWRARLRLLARTFPDSGWPDTDDAALLDNLEVWLGPFLVGMTRWSDLARIDLLAAL 702

Query: 726 LAELAWEQRQEMERLAPSHLQVPSGSRIALDYSDAASPVLAVRLQEVFGLLDTPRVGGGK 785
            + + +  +Q+++ LAP+HL +P+G R++LDY+    PVLA +LQ +FG  +TP V GG+
Sbjct: 703 NSLIDYPAQQQLQSLAPTHLTIPTGQRVSLDYTADNGPVLAAKLQALFGWKETPAVAGGR 762

Query: 786 VPLLLHLLSPASRPVQVTRDLRSFWSNGYFEVRKDLRGRYPKHHWPDDPLTAPPTRGTKK 845
           VP++LHLLSPA RP+ VT DL  FW N Y EVRKD+RGRYPKH WP+DP TA   +GTKK
Sbjct: 763 VPVVLHLLSPAQRPLAVTADLAGFWRNAYPEVRKDMRGRYPKHPWPEDPFTAEAQQGTKK 822

Query: 846 RP 847
           RP
Sbjct: 823 RP 824