Pairwise Alignments

Query, 848 a.a., ATP-dependent helicase HrpB from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 1311 a.a., RNA helicase, ATP-dependent DEAH box, HrpA type from Marinobacter adhaerens HP15

 Score =  245 bits (625), Expect = 1e-68
 Identities = 153/457 (33%), Positives = 249/457 (54%), Gaps = 6/457 (1%)

Query: 13  LPVKEALPRLLQVLNTSNRAVLEAPPGAGKTTLVPLALLEADWRGDGKILVLEPRRLATR 72
           LPV E +  + + +      ++    G+GKTT +P   + +     G I   +PRR+A R
Sbjct: 86  LPVSERVDDIREAIENHQVVIIAGETGSGKTTQIPKICMNSGRGIRGLIGHTQPRRIAAR 145

Query: 73  AAAERMADLLGEPVGQTVGYWVRMDHKVSRKTRVEVVTEGILTRIIQDDPALEGVAAIIF 132
           + A R+A+ +GE +GQ +GY VR     S ++RV+V+T+GIL   +Q D  L+    II 
Sbjct: 146 SVAARIAEEIGEQIGQQIGYQVRFTDNTSEQSRVKVMTDGILLAEVQHDRFLDRYDTIII 205

Query: 133 DEFHERNLQADLGLALALDAQAVLRPDLRLLVMSATLDATAIGQWL-QAPVVQSEGRLFP 191
           DE HER+L  D  L   L      RPDL++++ SAT++     ++  +APV++  GR +P
Sbjct: 206 DEAHERSLNIDFLLGY-LRQLLPKRPDLKVIITSATIEVERFSEFFDKAPVIEVSGRTYP 264

Query: 192 VQTHF--LSPAEVAAAGNYPSQRLATLTPKAIRQALSQEAEGDLLVFLPGMGEIKKVAQQ 249
           V   +  L+  E      +    L  L      +   ++  GD+LVFLPG  EI+ +++ 
Sbjct: 265 VDVRYRPLTGDEDDRDQGWTDGVLGALDEIEQHERSQKQPPGDILVFLPGEREIRNLSKV 324

Query: 250 LENTLGPAIELHLLHGDLPLSKQVAAIQPSPKGKRKVVLATSIAETSLTIEGVTIVVDGG 309
           L +      E+  L+  L  ++Q    Q S KG+R +VL+T++AETSLT+ G+  V+D G
Sbjct: 325 LRHVDLRHTEVLPLYSRLSNAEQNRVFQ-SHKGRR-IVLSTNVAETSLTVPGIRYVIDTG 382

Query: 310 FARVPRFTPRTGLTTLATVPVSQAGADQRRGRAGRLGPGVCYRLWSTADQMQLPPRQSPE 369
            AR+ R++ R+ +  L   P+SQA A+QR GR GR+ PG+C+RL+   D +  P    PE
Sbjct: 383 VARISRYSVRSKIQRLPVEPISQASANQRAGRCGRVAPGICFRLYDETDFINRPEYTDPE 442

Query: 370 ILDADLTGLVLELALWGVKDATTLNWLDSPPAAALALAKDLLQRLEALDAAGNPTPHGKA 429
           IL  +L  ++L++A  G+ +     +L++P    +     LL+ L A+D     T  G+ 
Sbjct: 443 ILRTNLASVILQMATSGLGEIRQFPFLEAPDKRQVNDGYKLLEELGAVDDKRRVTRLGRT 502

Query: 430 LASLGIHPRLGHLVMRGHELGFGATACALAALLSERD 466
           +A L + PRL  +++   ELG  +    + A LS +D
Sbjct: 503 MARLPLDPRLARMLVTAAELGSLSETLVIIAGLSIQD 539



 Score = 27.7 bits (60), Expect = 0.005
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 238 PGMGEIKKVAQQLENTLGPAIELHLLH------GDLPLSKQVAAIQPSPKGKRKVVLA 289
           PG  +++K+A  LE  L    + H LH        LP+S++V  I+ + +  + V++A
Sbjct: 51  PGQKDLEKMASWLERGLEKVQQRHALHKPASFPEGLPVSERVDDIREAIENHQVVIIA 108