Pairwise Alignments

Query, 202 a.a., RNA polymerase subunit sigma-24 from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 193 a.a., RNA polymerase sigma factor RpoE from Pseudomonas stutzeri RCH2

 Score = 93.2 bits (230), Expect = 3e-24
 Identities = 56/184 (30%), Positives = 104/184 (56%), Gaps = 10/184 (5%)

Query: 12  KHDFKLIQAAVEENDEKAYAELMSIYKKPVYHVVLKMVRNADDAEDLTIEAFAKAFKNLH 71
           + D +L++  V+  D++A+  L+  Y+  +  ++++ V ++ +A+D+  EAF KA++ L 
Sbjct: 5   EQDQQLVER-VQRGDKRAFDLLVMKYQHKILGLIVRFVHDSHEAQDVAQEAFIKAYRALA 63

Query: 72  KFNPEYAFSTWLFRIATNNCIDFIRKNRIKTMS---IDSAIKIDNGDEITIDFKDKNLNP 128
            F  + AF TWL+RIA N       KN +        DS +  ++ +    D   K++  
Sbjct: 64  NFRGDSAFYTWLYRIAINTA-----KNHLVARGRRPPDSDVSSEDAEFYEGDHALKDIES 118

Query: 129 QEEAIKNQKIE-IMQYVVAKLPEKYQRLVTLRYFNELSYEEIATELNAPLGTVKAQLHRA 187
            E ++   +IE  +   +  LPE  +  +TLR F+ LSYE+IA+ +  P+GTV++++ RA
Sbjct: 119 PERSLLRDEIEDTVHRTIQLLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRA 178

Query: 188 RELL 191
           RE +
Sbjct: 179 REAI 182